Basic Statistics
Measure | Value |
---|---|
Filename | SRR522084_1.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 26822612 |
Sequences flagged as poor quality | 0 |
Sequence length | 50 |
%GC | 44 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
TCTCTGAGCGGGCTGGCAAGGCAGACCGATATCGTATGCCGTCTTCTGCT | 172008 | 0.6412798276319994 | Illumina PCR Primer Index 1 (95% over 24bp) |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 101213 | 0.37734207242754736 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 94946 | 0.35397745752725346 | No Hit |
TCTCTGAGCGGGCTGGCAAGGCAGACCGATCTCGTATGCCGTCTTCTGCT | 87000 | 0.3243531987115945 | Illumina Paired End PCR Primer 2 (96% over 29bp) |
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 59811 | 0.22298723181769176 | No Hit |
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 40784 | 0.15205081443969737 | No Hit |
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 32947 | 0.12283292917184949 | No Hit |
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 32594 | 0.12151687538857141 | No Hit |
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 27453 | 0.10235021108309661 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATGCCG | 33915 | 0.0 | 36.870914 | 35 |
CCGTCTT | 34415 | 0.0 | 36.22091 | 39 |
GCCGTCT | 34550 | 0.0 | 35.989403 | 38 |
CGTCTTC | 34960 | 0.0 | 35.62342 | 40 |
ATGCCGT | 35420 | 0.0 | 35.12261 | 36 |
TCGTATG | 35510 | 0.0 | 35.019547 | 32 |
CGTATGC | 35835 | 0.0 | 34.83933 | 33 |
GGTATCA | 39975 | 0.0 | 34.784687 | 1 |
TATCGTA | 22695 | 0.0 | 34.771786 | 30 |
ATATCGT | 22720 | 0.0 | 34.733124 | 29 |
GACCGAT | 35410 | 0.0 | 34.538097 | 24 |
ATCGTAT | 23155 | 0.0 | 34.50366 | 31 |
TGCCGTC | 36270 | 0.0 | 34.26286 | 37 |
GATATCG | 23205 | 0.0 | 34.1218 | 28 |
GCGGGCT | 38165 | 0.0 | 34.024975 | 8 |
TGAGCGG | 38315 | 0.0 | 33.824894 | 5 |
AGACCGA | 37055 | 0.0 | 33.81558 | 23 |
CGATATC | 23465 | 0.0 | 33.73135 | 27 |
ACCGATA | 23395 | 0.0 | 33.71826 | 25 |
CCGATAT | 23580 | 0.0 | 33.49431 | 26 |