Basic Statistics
Measure | Value |
---|---|
Filename | SRR522074_1.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 27195847 |
Sequences flagged as poor quality | 0 |
Sequence length | 50 |
%GC | 46 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
TCTCTGAGCGGGCTGGCAAGGCAGACCGATATCGTATGCCGTCTTCTGCT | 1160350 | 4.2666440945928255 | Illumina PCR Primer Index 1 (95% over 24bp) |
TCTCTGAGCGGGCTGGCAAGGCAGACCGATCTCGTATGCCGTCTTCTGCT | 303632 | 1.1164645837285376 | Illumina Paired End PCR Primer 2 (96% over 29bp) |
CTTATACACATCTCTGAGCGGGCTGGCAAGGCAGACCGATATCGTATGCC | 103494 | 0.3805507510025336 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 79599 | 0.2926880710867361 | No Hit |
CATCTCTGAGCGGGCTGGCAAGGCAGACCGATATCGTATGCCGTCTTCTG | 70661 | 0.25982275896757323 | Illumina Paired End PCR Primer 2 (96% over 26bp) |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 69072 | 0.25397995510123295 | No Hit |
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 43031 | 0.15822636448866623 | No Hit |
ATACACATCTCTGAGCGGGCTGGCAAGGCAGACCGATATCGTATGCCGTC | 39900 | 0.14671357726052806 | No Hit |
ACACATCTCTGAGCGGGCTGGCAAGGCAGACCGATATCGTATGCCGTCTT | 37501 | 0.13789237746483868 | No Hit |
CTTATACACATCTCTGAGCGGGCTGGCAAGGCAGACCGATCTCGTATGCC | 30670 | 0.11277457179399487 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TTCTGCT | 183730 | 0.0 | 38.724472 | 44 |
CTTCTGC | 186585 | 0.0 | 38.1197 | 43 |
CGTCTTC | 184990 | 0.0 | 37.946835 | 40 |
CCGTCTT | 189240 | 0.0 | 37.1633 | 39 |
GCCGTCT | 189790 | 0.0 | 37.083218 | 38 |
GTCTTCT | 190195 | 0.0 | 36.95517 | 41 |
TCTTCTG | 193045 | 0.0 | 36.32546 | 42 |
TATGCCG | 195780 | 0.0 | 36.092747 | 35 |
ATGCCGT | 195730 | 0.0 | 35.987766 | 36 |
TGCCGTC | 195515 | 0.0 | 35.974445 | 37 |
ACCGATA | 158785 | 0.0 | 34.061077 | 25 |
CCGATAT | 158435 | 0.0 | 33.989735 | 26 |
GACCGAT | 208365 | 0.0 | 33.9337 | 24 |
ATATCGT | 158040 | 0.0 | 33.85266 | 29 |
ATCGTAT | 159475 | 0.0 | 33.848663 | 31 |
GATATCG | 159475 | 0.0 | 33.84682 | 28 |
CGATATC | 159360 | 0.0 | 33.842365 | 27 |
TATCGTA | 158135 | 0.0 | 33.83437 | 30 |
TGAGCGG | 219535 | 0.0 | 33.817787 | 5 |
GCGGGCT | 219260 | 0.0 | 33.81535 | 8 |