Basic Statistics
Measure | Value |
---|---|
Filename | SRR522064_1.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 41550639 |
Sequences flagged as poor quality | 0 |
Sequence length | 50 |
%GC | 45 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 115883 | 0.2788958311808394 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TCAACGC | 21970 | 0.0 | 11.195291 | 9 |
CAACGCA | 22270 | 0.0 | 11.143267 | 10 |
AAGCAGT | 22430 | 0.0 | 11.070774 | 1 |
ATCAACG | 22490 | 0.0 | 10.9658 | 8 |
GGTATCA | 24430 | 0.0 | 10.236917 | 5 |
GTGGTAT | 24720 | 0.0 | 10.0812435 | 3 |
AACGCAG | 25075 | 0.0 | 10.01079 | 11 |
TGGTATC | 25485 | 0.0 | 9.821771 | 4 |
AGCAGTG | 25825 | 0.0 | 9.655221 | 2 |
ACGCAGA | 25845 | 0.0 | 9.64444 | 12 |
CGCAGAG | 25730 | 0.0 | 9.627693 | 13 |
GTATCAA | 27445 | 0.0 | 9.280631 | 6 |
AGTGGTA | 28515 | 0.0 | 8.983638 | 2 |
GAGTACA | 23325 | 0.0 | 8.675504 | 17 |
AGAGTAC | 29655 | 0.0 | 8.388672 | 16 |
CAGTGGT | 31980 | 0.0 | 8.281049 | 1 |
TACATGG | 23970 | 0.0 | 8.23155 | 20 |
ACATGGG | 24375 | 0.0 | 8.121853 | 21 |
GCAGAGT | 32135 | 0.0 | 7.8730345 | 14 |
CAGAGTA | 32600 | 0.0 | 7.7792945 | 15 |