SRR522059_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR522059_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	35370644
Sequences flagged as poor quality	0
Sequence length	50
%GC	47

Per base quality graph

Per base quality graph

Per Sequence quality graph

$Per sequence GC content graph$

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
TCTCTGAGCGGGCTGGCAAGGCAGACCGATATCGTATGCCGTCTTCTGCT	91557	0.25885024881085006	Illumina PCR Primer Index 1 (95% over 24bp)
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	56802	0.16059079953421262	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	48410	0.13686490978224766	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GGTATCA	27965	32.094505	1
TATGCCG	19905	30.908037	35
ACCGATA	14730	29.674757	25
GACCGAT	20755	29.514793	24
ATGCCGT	20930	29.240406	36
GATATCG	15005	29.028915	28
CGATATC	14935	28.98943	27
GCCGTCT	21260	28.812225	38
CCGATAT	15260	28.451721	26
ATATCGT	15380	27.980068	29
ATCGTAT	15660	27.919983	31
TCGTATG	22055	27.844742	32
TGAGCGG	23670	27.82864	5
TGCCGTC	22235	27.513676	37
CCGTCTT	22275	27.49366	39
AGACCGA	23130	27.34191	23
GCGGGCT	24060	27.223398	8
TATCGTA	16000	27.147987	30
CGTATGC	22815	27.055658	33
AGCGGGC	25635	25.66993	7