Basic Statistics
Measure | Value |
---|---|
Filename | SRR522041_1.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 29038282 |
Sequences flagged as poor quality | 0 |
Sequence length | 50 |
%GC | 47 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAG | 115855 | 0.39897332769204463 | Illumina Paired End PCR Primer 2 (97% over 36bp) |
CGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCG | 61087 | 0.21036712846855057 | Illumina Paired End PCR Primer 2 (100% over 31bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATGCCG | 3615 | 0.0 | 24.709236 | 43 |
ACCGATA | 3195 | 0.0 | 23.13389 | 33 |
GACCGAT | 3970 | 0.0 | 23.105497 | 32 |
GATATCG | 3235 | 0.0 | 22.916595 | 36 |
CGATATC | 3365 | 0.0 | 22.09652 | 35 |
TGCCGAG | 29485 | 0.0 | 21.575094 | 26 |
GCCGAGA | 29565 | 0.0 | 21.464819 | 27 |
AGATCGG | 24670 | 0.0 | 21.381668 | 31 |
CGAGATC | 24730 | 0.0 | 21.374487 | 29 |
GAGATCG | 25020 | 0.0 | 21.152788 | 30 |
ATGCCGA | 30215 | 0.0 | 21.083393 | 25 |
CCGATAT | 3735 | 0.0 | 20.025335 | 34 |
CCGAGAT | 27030 | 0.0 | 19.669617 | 28 |
AATGCCG | 33060 | 0.0 | 19.182287 | 24 |
GAGACCG | 5260 | 0.0 | 17.856709 | 30 |
TCGTATG | 5200 | 0.0 | 17.768658 | 40 |
AGACCGA | 5330 | 0.0 | 17.746096 | 31 |
CGAGACC | 5560 | 0.0 | 16.933043 | 29 |
ATCGTAT | 4440 | 0.0 | 16.895327 | 39 |
GATCGGA | 38695 | 0.0 | 16.848152 | 1 |