SRR491020_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR491020_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	22083970
Sequences flagged as poor quality	0
Sequence length	100
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	90992	0.41202736645630295	No Hit
ATATCTCGAGGGCGCGCCGGATCCTTTTTTTTTTTTTTTTTTTTTTTTTT	85141	0.38553303595322763	No Hit
ATATGGATCCGGCGCGCCGTCGACTTTTTTTTTTTTTTTTTTTTTTTTTT	68817	0.3116151670193358	No Hit
GATCCGGCGCGCCGTCGACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	53040	0.2401742078077447	No Hit
ATCTCGAGGGCGCGCCGGATCCTTTTTTTTTTTTTTTTTTTTTTTTTTTT	43681	0.197795052248305	No Hit
ATCCGGCGCGCCGTCGACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	34959	0.15830034183165437	No Hit
TCCGGCGCGCCGTCGACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	32100	0.14535429997414415	No Hit
CGGCGCGCCGTCGACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	27069	0.12257306996885071	No Hit
GAGGGCGCGCCGGATCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	26540	0.12017766733064754	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TATCTCG	21620	60.74253	2
ATATCTC	23750	56.235737	1
ATCTCGA	30725	42.41757	3
ATGGATC	27225	40.913647	3
TATGGAT	27785	40.464386	2
ATATGGA	28805	39.332718	1
TCTCGAG	34745	37.144623	4
GGATCCG	29300	36.957756	5
TGGATCC	30830	36.038086	4
CTCGAGG	41660	30.990608	5
GATCCGG	44825	29.376333	1
TCGAGGG	46855	27.464092	6
ATCCGGC	55185	23.703602	2
CGAGGGC	60645	21.071817	7
TCCGGCG	67980	19.295961	3
AGGGCGC	73165	17.247484	9
ATCCCGC	3995	16.58785	6
GAGGGCG	78410	16.261631	8
GCGCCGT	80375	16.080387	9
CGGCGCG	81365	15.954263	5