SRR491003_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR491003_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	25135705
Sequences flagged as poor quality	0
Sequence length	100
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
ATATGGATCCGGCGCGCCGTCGACTTTTTTTTTTTTTTTTTTTTTTTTTT	111563	0.4438427328773949	No Hit
ATATCTCGAGGGCGCGCCGGATCCTTTTTTTTTTTTTTTTTTTTTTTTTT	78109	0.3107491912401104	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	76222	0.30324194208994737	No Hit
GATCCGGCGCGCCGTCGACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	48193	0.19173124445882858	No Hit
ATCTCGAGGGCGCGCCGGATCCTTTTTTTTTTTTTTTTTTTTTTTTTTTT	47742	0.18993698406310863	No Hit
ATCCGGCGCGCCGTCGACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	39678	0.15785513077910485	No Hit
TCCGGCGCGCCGTCGACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	35449	0.14103045846535833	No Hit
CGGCGCGCCGTCGACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	34363	0.1367099112597001	No Hit
CCGGCGCGCCGTCGACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	26652	0.10603243473775652	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TATCTCG	21290	52.834023	2
ATATCTC	21715	52.7895	1
TATGGAT	32580	50.00474	2
ATATGGA	34470	47.601826	1
ATGGATC	34990	46.43855	3
GGATCCG	36020	44.497498	5
TGGATCC	38590	41.996986	4
ATCTCGA	31530	35.525127	3
TCTCGAG	34695	31.999914	4
GATCCGG	50850	31.389692	6
CTCGAGG	39625	27.864483	5
TCGAGGG	43220	25.375229	6
ATCCGGC	63675	24.844526	7
TCCGGCG	75610	20.629314	8
CGGATCC	153900	20.51371	6
CCGGATC	155750	20.27663	5
GCCGGAT	155970	20.247866	4
CGCCGGA	157830	20.026976	3
GCGCCGG	160415	19.830788	2
CGAGGGC	55655	19.729969	7