SRR490997_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR490997_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	33894431
Sequences flagged as poor quality	0
Sequence length	100
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
ATATGGATCCGGCGCGCCGTCGACTTTTTTTTTTTTTTTTTTTTTTTTTT	126388	0.37288721560187865	No Hit
ATATCTCGAGGGCGCGCCGGATCCTTTTTTTTTTTTTTTTTTTTTTTTTT	123783	0.3652015872459992	No Hit
GATCCGGCGCGCCGTCGACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	59755	0.17629739823630614	No Hit
ATCTCGAGGGCGCGCCGGATCCTTTTTTTTTTTTTTTTTTTTTTTTTTTT	53365	0.15744474365125055	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	40670	0.11999021314150397	No Hit
ATCCGGCGCGCCGTCGACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	39640	0.11695136584532133	No Hit
TCCGGCGCGCCGTCGACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	34153	0.10076286573449189	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
ATATCTC	36295	57.3707	1
TATCTCG	38995	52.129055	2
ATGGATC	46355	45.686615	3
ATCTCGA	46030	43.427616	3
ATATGGA	50570	42.309437	1
GGATCCG	48795	42.1751	5
TATGGAT	51880	41.137688	2
TGGATCC	51645	40.820694	4
TCTCGAG	51330	38.289814	4
CTCGAGG	59935	32.635746	5
GATCCGG	69010	29.769117	6
TCGAGGG	67800	28.665905	6
ATCCGGC	81410	24.651451	7
CGAGGGC	88045	21.775116	7
TCCGGCG	101445	19.671797	8
AGGGCGC	104145	18.183554	9
CCGGCGC	116505	17.048445	9
GAGGGCG	113000	16.833311	8
GCGCCGT	120415	14.623107	9
CGGCGCG	120505	14.567777	5