SRR490996_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR490996_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	39065873
Sequences flagged as poor quality	0
Sequence length	100
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
ATATCTCGAGGGCGCGCCGGATCCTTTTTTTTTTTTTTTTTTTTTTTTTT	215232	0.5509463464441202	No Hit
ATATGGATCCGGCGCGCCGTCGACTTTTTTTTTTTTTTTTTTTTTTTTTT	202280	0.5177920892744416	No Hit
ATCTCGAGGGCGCGCCGGATCCTTTTTTTTTTTTTTTTTTTTTTTTTTTT	91152	0.23332897232323466	No Hit
GATCCGGCGCGCCGTCGACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	83682	0.21420742344603433	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	77679	0.19884107031218784	No Hit
ATCCGGCGCGCCGTCGACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	57146	0.14628112880006547	No Hit
TCCGGCGCGCCGTCGACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	51370	0.1314958454915368	No Hit
CGGCGCGCCGTCGACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	45380	0.11616276948425036	No Hit
GAGGGCGCGCCGGATCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	39206	0.10035869414719081	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
ATATCTC	52805	65.04083	1
TATCTCG	54850	61.006027	2
TATGGAT	63010	50.876667	2
ATATGGA	63775	50.648438	1
ATGGATC	64080	49.881046	3
ATCTCGA	70035	47.021317	3
GGATCCG	66795	46.033936	5
TGGATCC	72005	44.13154	4
TCTCGAG	78560	41.226414	4
CTCGAGG	89275	36.104713	5
GATCCGG	91530	33.466187	6
TCGAGGG	98920	32.466152	6
ATCCGGC	106780	28.078777	7
CGAGGGC	121110	26.051449	7
TCCGGCG	131800	22.630896	8
AGGGCGC	142275	21.94167	9
GAGGGCG	148545	21.116655	8
CCGGCGC	151320	19.509869	9
GCGCCGT	155835	14.035947	9
CGGCGCG	158840	13.855498	5