Basic Statistics
Measure | Value |
---|---|
Filename | SRR445726_1.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 49180773 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 44 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
ATATCTCGAGGGCGCGCCGGATCCTTTTTTTTTTTTTTTTTTTTTTTTTT | 127575 | 0.2594001521692227 | No Hit |
ATATGGATCCGGCGCGCCGTCGACTTTTTTTTTTTTTTTTTTTTTTTTTT | 124222 | 0.25258244720960366 | No Hit |
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 63225 | 0.12855633643659892 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATCTCG | 42095 | 0.0 | 65.81197 | 2 |
ATATCTC | 45465 | 0.0 | 61.696644 | 1 |
ATCTCGA | 59330 | 0.0 | 46.310463 | 3 |
TATGGAT | 53970 | 0.0 | 44.27582 | 2 |
ATATGGA | 57665 | 0.0 | 41.908905 | 1 |
TCTCGAG | 68380 | 0.0 | 39.857952 | 4 |
CTCGAGG | 78290 | 0.0 | 34.694492 | 5 |
ATGGATC | 73140 | 0.0 | 32.829544 | 3 |
GGATCCG | 72205 | 0.0 | 32.47584 | 5 |
TGGATCC | 82425 | 0.0 | 28.999989 | 4 |
TCGAGGG | 106015 | 0.0 | 25.563635 | 6 |
GATCCGG | 94885 | 0.0 | 24.748665 | 6 |
CGAGGGC | 122035 | 0.0 | 22.154133 | 7 |
ATCCGGC | 105050 | 0.0 | 22.067842 | 7 |
AGGGCGC | 131705 | 0.0 | 20.463646 | 9 |
GAGGGCG | 136130 | 0.0 | 19.850044 | 8 |
TCCGGCG | 117440 | 0.0 | 19.667763 | 8 |
GCGCCGT | 123900 | 0.0 | 13.260259 | 9 |
CCGGCGC | 177000 | 0.0 | 12.967441 | 9 |
CGTCGAC | 121785 | 0.0 | 12.21179 | 12-13 |