SRR212888_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR212888_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	94759
Sequences flagged as poor quality	0
Sequence length	56
%GC	48

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

Sequence	Count	Percentage	Possible Source
TGCGGAGGGGCTTTTTCCTCCTCTTTAAGCCGTACCTGAACATCTCACACCATGGC	1193	1.2589833155689698	No Hit
TGCGGAGGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1055	1.11335071075043	No Hit
TGCGGAGGGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	653	0.6891166010616406	No Hit
TGCGGAGGGATTTCAGACCATCTCATTCATGATAAGGGAAATTCAATCTAGAATTA	592	0.6247427684969238	No Hit
TGCGGAGGGAAGCAGTGGTATCAACGCAGAGTCGACTTTTTTTTTTTTTTTTTTTT	452	0.47699954621724583	No Hit
TGCGGAGGGATTTGACTTGGGGAGAATTATTTTTTACAAAAATACAAAATAGCTTT	307	0.3239797802847223	No Hit
TGCGGAGGGGACGTTCTATTTATTTTCGCAGTAATCTCCATGTCCCACAGGCAGAG	280	0.29548644455935585	No Hit
TGCGGAGGGGGTTTGGTCTGGGATCAATAGGGAAACACAGGTAGCCAACTAGGAGG	261	0.2754355786785424	No Hit
TGCGGAGGGAGTTTTAACAAATAAAGACAAAAAAAATCACATAAGATACTAAAAGT	259	0.2733249612174042	No Hit
TGCGGAGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	205	0.21633828976667124	No Hit
TGCGGAGGGGAGTCGACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	195	0.20578520246097998	No Hit
TGCGGAGGGGTCTGGGACCCCTGGAGAGTTCTGCCTGCTGAGCCAAACCTCCTCTA	182	0.1920661889635813	No Hit
TGCGGAGGGGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	179	0.1889002627718739	No Hit
TGCGGAGGGACCCAGACACCTCTGCTTTCTTTTGCCATCTGACCTGCAGCACTGTC	178	0.18784495404130477	No Hit
TGCGGAGGGGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	170	0.17940248419675175	No Hit
TGCGGAGGGGTAGCCAACTAGGAGGAAATGTACTGAATGCTAGTACCCAAGACCTT	160	0.1688493968910605	No Hit
TGCGGAGGGAATGTGGGGATAGTGTGTGGAACACCCTGTTTCACCTTTATAGCCCC	145	0.15301976593252356	No Hit
TGCGGAGGGGGCTGTGTGTTCAAACACCCCTCCCACAGGACTCACTTTGTCCCAAC	144	0.15196445720195442	No Hit
TGCGGAGGGACCTCTGCTTTCTTTTGCCATCTGACCTGCAGCACTGTCAGGACATG	136	0.1435219873574014	No Hit
TGCGGAGGGACCTTTGACAGCATGATTGTAGACAACACAACAATGCAGCTGGTATC	135	0.14246667862683227	No Hit
TGCGGAGGGGGACTTGATTGCTGCTGCTTCTGAGCTTGCTCCCGCGCTTTCGGCAT	134	0.14141136989626316	No Hit
TGCGGAGGGACGTCTGGGACCCCTGGAGAGTTCTGCCTGCTGAGCCAAACCTCCTC	133	0.14035606116569402	No Hit
TGCGGAGGGCAGAGTCGACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	124	0.1308582825905719	No Hit
TGCGGAGGGATCAACAATCCAGACATCTCAATCCCCTTTCCTGATTGGCCATCCAT	123	0.12980297386000275	No Hit
TGCGGAGGGCTGGGAGGTACCTGGGCTGCCCAAGGCCCATGGACATTGATTCACCT	121	0.1276923563988645	No Hit
TGCGGAGGGGGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	118	0.12452643020715709	No Hit
TGCGGAGGGGTCGACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	115	0.1213605040154497	No Hit
TGCGGAGGGGTCTCCATGTTTTCTTTTTTAACTTTGCACTTTCTTTGTATAATAAT	111	0.1171392690931732	No Hit
TGCGGAGGGCTTGCGGAGGGGTGACAAAGTTGGATACCAAAAATAGCCAACACTAT	105	0.11080741670975844	No Hit
TGCGGAGGGGGTCTGTATCAGGGCGGCGCGTGGTCCACGCCGAGCGACTGAGAAGC	104	0.10975210797918931	No Hit
TGCGGAGGGGAGGAGTTCACAGCTCAGATGATCACCATCACGCCGCCTGATCAAGA	100	0.1055308730569128	No Hit
TGCGGAGGGGCTCGGTCTTAGCGCCATCTTCCTTGAGACTCCTGCGCCATGAGAGC	99	0.10447556432634367	No Hit
TGCGGAGGGGTGTTTCTCGGCCTCATCCTGTACTGCGTGGTGACATCTCCCATGCT	97	0.10236494686520542	No Hit
TGCGGAGGGGCTTTCTGACCCTTTCCGGGCGTTCAAGATGTCGAAGCGAGGACGCG	97	0.10236494686520542	No Hit
TGCGGAGGGGCTCTCGGTCTTAGCGCCATCTTCCTTGAGACTCCTGCGCCATGAGA	97	0.10236494686520542	No Hit

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACAGCGT	15	0.008273049	50.203823	50
AGGATAA	20	4.0814618E-4	50.20382	50
CTAGAAT	75	0.0	50.17719	48
CAGGCAC	15	0.008290432	50.177185	49
CACAGCG	15	0.008290432	50.177185	49
CTATATA	35	5.1193638E-8	50.12401	43
GCTATAT	35	5.1193638E-8	50.12401	42
TTCAATC	75	0.0	50.12401	42
GCGATAG	25	2.0426514E-5	50.12401	42
CGATAGC	25	2.0426514E-5	50.12401	43
GCCCAAA	15	0.00832528	50.124004	45
AGATACT	30	1.0200147E-6	50.124004	44
ACTTGGA	20	4.1136617E-4	50.124004	43
TTGAGAG	15	0.00832528	50.124004	42
GTCCCAC	20	4.1136617E-4	50.124004	42
GCCAAAC	15	0.00832528	50.124004	44
ATTTACT	20	4.12444E-4	50.097458	39
ACTTAGC	20	4.12444E-4	50.097458	39
CTTAGCA	20	4.12444E-4	50.097458	40
CATAAAC	25	2.06196E-5	50.044445	34

Summary

Basic Statistics

Per base sequence quality

Per tile sequence quality

Per sequence quality scores

Per base sequence content

Per sequence GC content

Per base N content

Sequence Length Distribution

Sequence Duplication Levels

Overrepresented sequences

Adapter Content

Kmer Content