SRR212858_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR212858_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	328083
Sequences flagged as poor quality	0
Sequence length	56
%GC	52

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGGCAGGGGAAGCAGTGGTATCAACGCAGAGTCGACTTTTTTTTTTTTTTTTTTTT	1763	0.5373640206898864	No Hit
CGGCAGGGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1760	0.5364496179320477	No Hit
CGGCAGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTCTTCC	1380	0.4206252686058102	No Hit
CGGCAGGGGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1348	0.4108716391888638	No Hit
CGGCAGGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	620	0.18897656995333498	No Hit
CGGCAGGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTCTTC	603	0.18379495432558224	No Hit
CGGCAGGGGGCTCTCGGTCTTAGCGCCATCTTCCTTGAGACTCCTGCGCCATGAGA	537	0.16367809365313046	No Hit
CGGCAGGGGGCTCTTCCTGTCTGTATCAGGGCGGCGCGTGGTCCACGCCGAGCGAC	480	0.1463044412541948	No Hit
CGGCAGGGGAGATGAAGTCATTCAGAATTGCCCCATTGATGTCCGGCGTCCTCTCT	468	0.14264683022283997	No Hit
CGGCAGGGGGGGCTGGTGAGATGGCTCAGTGGGTTAGAGCACCCGACTGCTCTTCC	445	0.13563640907940977	No Hit
CGGCAGGGGGCTCTTCGGACTTGGGCTTGGGTTCCGGCGACATGGCTAAACGCACC	421	0.12832118701670003	No Hit
CGGCAGGGGGGAGCTGAAGAGATGGCTGAGCGGTTAAGAGCACTGACTGCTCTTCC	407	0.12405397414678604	No Hit
CGGCAGGGGATTCCAAGTATCCATGAAATAAGTGGTTACAGGAAGTCCCTCACCCT	356	0.10850912726352784	No Hit
CGGCAGGGGGAGTCGACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	348	0.10607071990929125	No Hit
CGGCAGGGGGTCAATAAACTTAAAACTACTGTTGTGTCTAAAAAGTCGGTGTTGTA	344	0.10485151623217295	No Hit
CGGCAGGGGGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	335	0.10210830795865682	No Hit
CGGCAGGGGGCTTTCTGACCCTTTCCGGGCGTTCAAGATGTCGAAGCGAGGACGCG	334	0.10180350703937723	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACACGAC	15	0.008243744	50.276794	48
CGTGCAC	15	0.008248757	50.269066	47
CTATACT	15	0.008263809	50.24589	45
TTGCGTG	15	0.008273854	50.230453	44
AGTCCGT	15	0.008319172	50.161095	40
TCGATAC	40	2.6193447E-9	50.114964	38
TCAGGCG	15	0.008349487	50.11496	37
ATCGATA	35	5.1792085E-8	50.11496	37
TAGGGCG	20	4.1386217E-4	50.099606	34
ATGCGTT	15	0.00835961	50.0996	33
TCGAGTA	15	0.00835961	50.0996	33
TATGCGT	15	0.008369742	50.084255	32
ACTTGCG	15	0.008390034	50.053585	31
CTAGTGA	15	0.008390034	50.053585	31
GTATGCG	15	0.008390034	50.053585	31
GTGCGAT	55	0.0	50.053585	31
ACGTTAC	35	5.2674295E-8	50.00765	29
TTAGCGA	20	4.176314E-4	50.00765	27
CTCGATG	15	0.00842054	50.00765	29
GCTCGAT	15	0.00842054	50.00765	28