FastQCFastQC Report
Tue 31 May 2016
SRR212805_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR212805_1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences63672
Sequences flagged as poor quality0
Sequence length58
%GC51

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTGGCGGGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA15372.413933911295389No Hit
CGTGGCGGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA9191.4433345897725844No Hit
CGTGGCGGGGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA5680.8920718683251665No Hit
CGTGGCGGGGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA4020.6313607237090086No Hit
CGTGGCGGGGTGTTACAAAAATAAGAATTGGAGCATTAACTTGAAATTGTCTTCAAGG3530.5544038195753235No Hit
CGTGGCGGGATTTAATTTTGACTAAAATGTGTCATTTGTATAAATTGTAACATCCGAT2820.4428948360346777No Hit
CGTGGCGGGGGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA2810.44132428697072495No Hit
CGTGGCGGGAGCTAGTGAGATGATATTTGTCTTTCTGAAAGACTGGTTTAATTTGCTT2580.40520165849981155No Hit
CGTGGCGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA2530.3973489131800478No Hit
CGTGGCGGGATAGAACAATTGCTTGGTTCTTGCCTTCAGTAGAATGGTTTTTTGTTTT2320.36436738283703984No Hit
CGTGGCGGGGGGCTGGTGAGATGGCTCAGTGGGGAAGAGCACCCGACTGCTCTTCCAA2020.3172509109184571No Hit
CGTGGCGGGGGGCTGGTGAGATGGCTCAGTGGGGAAGAGCACCCGACTGCTCTTCTGA1940.304686518406835No Hit
CGTGGCGGGGGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA1870.29369267495916573No Hit
CGTGGCGGGGGGCTGGTGAGATGGCTCAGTGGGGAAGAGCACCCGACTGCTCTTCCGA1640.25757004648825227No Hit
CGTGGCGGGAAGTAAGAATATTAAAATAGCAAGGAATGATGATTAAGGCTGAAGTGTA1480.23244126146500818No Hit
CGTGGCGGGGTGTTGGGTGCGTTGATTTAGATACGTTTATGTTCTCTGTTTAGGCCCA1120.1759014951627089No Hit
CGTGGCGGGGTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA1110.17433094609875613No Hit
CGTGGCGGGGATTAAGAAGAAAGAGTTTAAGTGTCAATAAACTTAAAACTACTGTTGT1110.17433094609875613No Hit
CGTGGCGGGAGTTACCATGGATTTTTCCAAATCTCTTTTGGTTTTTGTTTAACAAATG1030.16176655358713407No Hit
CGTGGCGGGACACAGGAAGAAAGCAGGGCTGGCACAAGAGCTTCTGCAGAGAAAGAGG910.14291996481970096No Hit
CGTGGCGGGGTCTAAAAAGTCGGTGTTGTACATAGCATAAAAATCCTTTGCCGAGGAT820.12878502324412613No Hit
CGTGGCGGGAGCATAAAAATCCTTTGCCGAGGATGATCCCAAGAAAGAAACAGCTTTG790.12407337605226787No Hit
CGTGGCGGGCAGCAAAGAGGACGACCCTAAATGGTCGATGAAGAGTTTGATTTTATTT770.12093227792436236No Hit
CGTGGCGGGCTCTCGGTCTTAGCGCCATCTTCCTTGAGACTCCTGCGCCATGAGAGCG760.1193617288604096No Hit
CGTGGCGGGGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA740.11622063073250409No Hit
CGTGGCGGGCTCTTCGGACTTGGGCTTGGGTTCCGGCGACATGGCTAAACGCACCAAG720.11307953260459858No Hit
CGTGGCGGGAACTAGAGATGTTCATGGTCAAAGTACTGCCTTTGCAGAGGAGCCTGTT700.10993843447669306No Hit
CGTGGCGGGATCCAGGCATGTGTTCCTCCTCTTCCTTGCTCATGTCTGACCTCCAGCT690.1083678854127403No Hit
CGTGGCGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTCTTCTGA680.10679733634878753No Hit
CGTGGCGGGGGGCTGGTGAGATGGCTCAGTGGGGTAGAGCACCCGACTGCTCTTCCGA660.10365623822088202No Hit
CGTGGCGGGGGGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA640.1005151400929765No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TTGTAAC353.7805876E-852.04406445
ATCCGAT353.7805876E-852.04406452
TAAATTG353.7805876E-852.04406441
ACATCCG353.7805876E-852.04406450
CATCCGA353.7805876E-852.04406451
TGTAACA353.7805876E-852.04406446
GTAACAT353.7805876E-852.04406447
TGTTTAT203.4086322E-452.0440641
CTATGCG150.00716492152.0440650
ATCTCCC150.00716492152.0440642
GAATGGT251.629231E-552.0440642
GTTTAAC150.00716492152.0440647
AACTTGA550.052.0440638
CGGTTCC150.00716492152.0440648
GCTATGG251.629231E-552.0440650
CGCGCCG150.00716492152.0440652
AATGGTT251.629231E-552.0440643
TTATCCG203.4086322E-452.0440644
AGCGGTT150.00716492152.0440627
ATCCGAG203.4086322E-452.0440646