SRR212741_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR212741_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	28427
Sequences flagged as poor quality	0
Sequence length	58
%GC	50

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

Sequence	Count	Percentage	Possible Source
GGCTGCGGGATTCGGGGACACCAGGTCACAGTGCTGGGGGAGATCAAAACCGGTAACT	243	0.8548211207654693	No Hit
GGCTGCGGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	220	0.7739121257958983	No Hit
GGCTGCGGGATCTTAATAACTACTATAGGAACAAAGGAAGTGGCTTTAATGACCCTGA	114	0.40102719245787455	No Hit
GGCTGCGGGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	113	0.39750941006789325	No Hit
GGCTGCGGGGGAGCAGCGCCTTGGAGGTCCCGTGGATCTGTGTCTTGCTTCAACAGTG	112	0.39399162767791185	No Hit
GGCTGCGGGAAGCAGTGGTATCAACGCAGAGTCGACTTTTTTTTTTTTTTTTTTTTTT	89	0.31308263270834064	No Hit
GGCTGCGGGACATTACTCTGTGCCTAATGTTCCTCCATGTAGTTGATTTTTTTTCTTT	88	0.30956485031835934	No Hit
GGCTGCGGGCTTCTCAGAACATCACCTACCACTGCAAGAACAGCATTGCGTACCTGGA	85	0.29901150314841524	No Hit
GGCTGCGGGGTGTCTGTGTGTGTGTGTGTCTGTGTGTGTGTCTGTTTGTGTGTGGGGT	77	0.2708692440285644	No Hit
GGCTGCGGGATCTTAATAACTACTATAGGAACAAAGGAAGTGGCTTTAATGACCTTGA	71	0.24976254968867626	No Hit
GGCTGCGGGAGCTCCAAAGACTTCCTTTAAAGAAGGCCTGGTCAGTAAACCAGCATCC	70	0.2462447672986949	No Hit
GGCTGCGGGCTGGCTGCGGGGGGAATTCCTTCGGCAACATTAACTGGTTGATGCTGAA	67	0.23569142012875083	No Hit
GGCTGCGGGATTCGTAGGAGTAAACATAACATTCTTCCCTCAACATTTCCTGGGCCTT	65	0.2286558553487881	No Hit
GGCTGCGGGATGCCACAACTAGATACATCAACATGATTTATCACAATTATCTCATCAA	64	0.22513807295880678	No Hit
GGCTGCGGGGAACAGCCAGGGCTACACAGAGAAACCCTGTCTCGAAAAACCAAAAAAA	63	0.2216202905688254	No Hit
GGCTGCGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	61	0.2145847257888627	No Hit
GGCTGCGGGAGGCTTCACCCTAGATGACACATGAGCAAAAGCCCACTTCGCCATCATA	60	0.21106694339888135	No Hit
GGCTGCGGGACTAAAATCTGGGGATGGGAGGGCTCATTTGTTGATAAATAGCACTATT	60	0.21106694339888135	No Hit
GGCTGCGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTCTTCCAA	59	0.20754916100889997	No Hit
GGCTGCGGGGACGGAGGGGAGATTGAGCGATGCTCTTTCCTTCTCTGTTTAGGAAGAA	57	0.20051359622893727	No Hit
GGCTGCGGGGTGTGGCCATCAAGATCCCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	55	0.19347803144897457	No Hit
GGCTGCGGGGCTTTTCCTGTGGGAGCAGCCGGGTAGAGAGGAGCGTGGCCTTCTCCTC	53	0.18644246666901187	No Hit
GGCTGCGGGGGGTTTCTAGTACATTCTTGGCTTTGCTATATCTATCTAGTGCCTGTTT	52	0.1829246842790305	No Hit
GGCTGCGGGCCTCCCAAAAGCCACCCCCACTCCTAAGAGGAGGATGGTCGCGTCCATG	51	0.17940690188904915	No Hit
GGCTGCGGGAAGCATATCTCTATTTAATTTGATATTGGCTGTTAGTTTGCAATAAATT	48	0.16885355471910507	No Hit
GGCTGCGGGAAGAAAGAATTTGCCTTCTTATGCAATTTACAGCAGCATCAGCGTGATC	48	0.16885355471910507	No Hit
GGCTGCGGGGCTTTCTGACCCTTTCCGGGCGTTCAAGATGTCGAAGCGAGGACGCGGT	48	0.16885355471910507	No Hit
GGCTGCGGGGTGTCTGTGTGTGTGTGTGTCTGTGTGTGTGTCTGTTTGTGTGTGGTGT	47	0.16533577232912372	No Hit
GGCTGCGGGATGTTCATGTGTGTGTGTGTTTAGAAGCCACAAGATAATGATAATGTTG	46	0.16181798993914237	No Hit
GGCTGCGGGGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	45	0.15830020754916102	No Hit
GGCTGCGGGTACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCC	45	0.15830020754916102	No Hit
GGCTGCGGGATTAAAATGTCTACGTAATCTTTCTTTCATATTGATTCTTCCTTTTCTT	44	0.15478242515917967	No Hit
GGCTGCGGGGGGCTGGTGAGATGGCTCAGTGGGTTAGAGCACCCGACTGCTCTTCCGA	44	0.15478242515917967	No Hit
GGCTGCGGGGTTACCTCAGGCAGTCACACAGTTTGAAGAACTGGTTGGAATGGCAGAG	41	0.1442290779892356	No Hit
GGCTGCGGGATCCAGTATTGGGAAATCAGCAAATATTAGCTGGTAACCTACAGTGAGG	40	0.14071129559925424	No Hit
GGCTGCGGGATGGTTCTAAGTTGTTTTCATTTTAAAATGATACAATAATAGCATTTGT	40	0.14071129559925424	No Hit
GGCTGCGGGCTGCTCCAACCATTTTACGGTTTCCTTGTCAGTTGTTCTCTGCAGTTAC	39	0.1371935132092729	No Hit
GGCTGCGGGCTCTAACTACCCTGTTTTCCTTTCCAATTACTCTTCAAGAGAAACCATA	38	0.13367573081929152	No Hit
GGCTGCGGGGCTCTTCGCCATCTTTACCCCGGCAGGCCGACATCTATCACCATGAAGG	38	0.13367573081929152	No Hit
GGCTGCGGGGGGAATTCCTTCGATTCTGTTTTGCTACCCGTTGTAGCGCCGGAAGATG	38	0.13367573081929152	No Hit
GGCTGCGGGGCTAGAGGAAAATGTCCATGAGGTTCTGCAAGCGGTGGATGCTGGAGAC	37	0.13015794842931017	No Hit
GGCTGCGGGCTAAGAGGAGGATGGTCGCGTCCATGCCCTGAGTCCACCCCGGGGAAGG	36	0.12664016603932882	No Hit
GGCTGCGGGAGCATTGCTTCTGTGTAAATTATGTACTGCAAAAATTTTTTTAAATCTT	35	0.12312238364934745	No Hit
GGCTGCGGGATTTGAGACAATGAGAATCCATGCATTGAGGGGAGAGAGGAAAGGAGGG	35	0.12312238364934745	No Hit
GGCTGCGGGATGTAATGTACACTGTAGCTATCCTCAGATACTCCAGAAGAGGGAGTCA	35	0.12312238364934745	No Hit
GGCTGCGGGATCTGGGGCTGTATGTAGGCCTTTGCGGGTGTTGTAGGTTTTTCTTTTT	35	0.12312238364934745	No Hit
GGCTGCGGGAGAAGGGGTGTCCTCCAAGGAAATGGCAACTCAGCTCGCCTTCATGCGC	34	0.1196046012593661	No Hit
GGCTGCGGGGCTCTCCGCCAGATCGCCGCCATCATGGACACGAGTCGCGTGCAGCCCA	34	0.1196046012593661	No Hit
GGCTGCGGGCTCTCCGCCAGATCGCCGCCATCATGGACACGAGTCGCGTGCAGCCCAT	33	0.11608681886938474	No Hit
GGCTGCGGGATTAGGAAAGCTCTCAGCTTAGGGAAAGATGAAAGTTTTAGATCCTAGA	32	0.11256903647940339	No Hit
GGCTGCGGGGTCAGGACATGGCCTGTGGCTGTGTGTTCAAACACCCCTCCCACAGGAC	32	0.11256903647940339	No Hit
GGCTGCGGGAGCCCTGTGTGCCGACTGGATATTGAGCCCAGGTCCTCAAAGACACAGG	32	0.11256903647940339	No Hit
GGCTGCGGGGTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	31	0.10905125408942204	No Hit
GGCTGCGGGGAGGTGGGAGAGCTCTGTTAGCTCCCAAGAGACTTGGAGTAAGAAAGAT	31	0.10905125408942204	No Hit
GGCTGCGGGAACTGGGGTGTCTGAAATACTACTTAAAACTCAGATGAAGATGAGCCTC	30	0.10553347169944068	No Hit
GGCTGCGGGACTGCTGTGTCTGCCTGTTTTCCTTTCTTATAACATACAGAAAGCATGA	30	0.10553347169944068	No Hit
GGCTGCGGGGGAATATTAGGCTAATACCTAATATTACTTAGTAAAACTTGATTTTCAA	30	0.10553347169944068	No Hit
GGCTGCGGGGAGGCATTCAGGCAGCGAGAGCAGAGCAGCGTAGAGCAGCACAGCTGAG	29	0.10201568930945933	No Hit
GGCTGCGGGACTACTACTGAGCTAGAGCCTCAACACATCTAATCTTTTTACTTATTTT	29	0.10201568930945933	No Hit
GGCTGCGGGGTGAGATTCAGTGTAACTGTCTGAAATATTCAGAATGTTTGTGCATTTG	29	0.10201568930945933	No Hit
GGCTGCGGGATCTTTATCTCTTCCATTTCTCCAGCTTCTCTCCCTGAGCTACCAGAAA	29	0.10201568930945933	No Hit
GGCTGCGGGAGTGAAACTGCGAATGGCTCATTAAATCAGTTATGGTTCCTTTGGTCGC	29	0.10201568930945933	No Hit
GGCTGCGGGGCCTTTCTCCTCGTTGGGCGTCTGAAGGCAAGATGGGTCACCAGCAGCT	29	0.10201568930945933	No Hit
GGCTGCGGGATTCTTTTTCTGTTTGGTGAAAAGATACCAGTAAAATGATAACATCTGG	29	0.10201568930945933	No Hit

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CAGCCCA	15	0.0071146404	52.06173	51
AGCCCAT	15	0.0071146404	52.06173	52
CAAGAGG	15	0.0071146404	52.06173	34
CAAGAAC	15	0.0071146404	52.06173	35
AAACCAG	15	0.0071146404	52.06173	47
CATTGCG	15	0.0071146404	52.06173	44
GTGCAGC	15	0.0071146404	52.06173	48
TGCGTAC	15	0.0071146404	52.06173	47
GTACCTG	15	0.0071146404	52.06173	50
CTCCCAC	15	0.0071146404	52.06173	47
CCAGCAT	15	0.0071146404	52.06173	50
AAACACC	15	0.0071146404	52.06173	39
AGGACGC	15	0.0071146404	52.06173	49
TTCAACA	15	0.0071146404	52.06173	49
TCGCGTG	15	0.0071146404	52.06173	44
AAGAGGG	25	1.6029655E-5	52.06173	47
CACGAGT	15	0.0071146404	52.06173	38
GGACACG	15	0.0071146404	52.06173	35
TAATGAC	15	0.0071146404	52.06173	47
TCAACAG	15	0.0071146404	52.06173	50

Summary

Basic Statistics

Per base sequence quality

Per tile sequence quality

Per sequence quality scores

Per base sequence content

Per sequence GC content

Per base N content

Sequence Length Distribution

Sequence Duplication Levels

Overrepresented sequences

Adapter Content

Kmer Content