SRR212740_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR212740_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	28748
Sequences flagged as poor quality	0
Sequence length	58
%GC	50

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

Sequence	Count	Percentage	Possible Source
GGCTGCGGGATTCGGGGACACCAGGTCACAGTGCTGGGGGAGATCAAAACCGGTAACT	261	0.9078892444691804	No Hit
GGCTGCGGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	252	0.8765827187978295	No Hit
GGCTGCGGGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	126	0.4382913593989147	No Hit
GGCTGCGGGATCTTAATAACTACTATAGGAACAAAGGAAGTGGCTTTAATGACCCTGA	123	0.4278558508417977	No Hit
GGCTGCGGGGGAGCAGCGCCTTGGAGGTCCCGTGGATCTGTGTCTTGCTTCAACAGTG	120	0.41742034228468067	No Hit
GGCTGCGGGAAGCAGTGGTATCAACGCAGAGTCGACTTTTTTTTTTTTTTTTTTTTTT	111	0.38611381661332966	No Hit
GGCTGCGGGACATTACTCTGTGCCTAATGTTCCTCCATGTAGTTGATTTTTTTTCTTT	87	0.3026297481563935	No Hit
GGCTGCGGGATGCCACAACTAGATACATCAACATGATTTATCACAATTATCTCATCAA	79	0.27480172533741476	No Hit
GGCTGCGGGGTGTCTGTGTGTGTGTGTGTCTGTGTGTGTGTCTGTTTGTGTGTGGGGT	76	0.26436621678029776	No Hit
GGCTGCGGGCTGGCTGCGGGGGGAATTCCTTCGGCAACATTAACTGGTTGATGCTGAA	74	0.2574092110755531	No Hit
GGCTGCGGGATCTTAATAACTACTATAGGAACAAAGGAAGTGGCTTTAATGACCTTGA	74	0.2574092110755531	No Hit
GGCTGCGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTCTTCCAA	71	0.24697370251843606	No Hit
GGCTGCGGGAGCTCCAAAGACTTCCTTTAAAGAAGGCCTGGTCAGTAAACCAGCATCC	69	0.2400166968136914	No Hit
GGCTGCGGGAGGCTTCACCCTAGATGACACATGAGCAAAAGCCCACTTCGCCATCATA	67	0.23305969110894673	No Hit
GGCTGCGGGGAACAGCCAGGGCTACACAGAGAAACCCTGTCTCGAAAAACCAAAAAAA	66	0.22958118825657436	No Hit
GGCTGCGGGGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	65	0.22610268540420203	No Hit
GGCTGCGGGATTCGTAGGAGTAAACATAACATTCTTCCCTCAACATTTCCTGGGCCTT	64	0.2226241825518297	No Hit
GGCTGCGGGTACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCC	64	0.2226241825518297	No Hit
GGCTGCGGGGTGTCTGTGTGTGTGTGTGTCTGTGTGTGTGTCTGTTTGTGTGTGGTGT	61	0.2121886739947127	No Hit
GGCTGCGGGCTTCTCAGAACATCACCTACCACTGCAAGAACAGCATTGCGTACCTGGA	59	0.20523166828996803	No Hit
GGCTGCGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	55	0.19131765688047864	No Hit
GGCTGCGGGGACGGAGGGGAGATTGAGCGATGCTCTTTCCTTCTCTGTTTAGGAAGAA	54	0.1878391540281063	No Hit
GGCTGCGGGATCCAGTATTGGGAAATCAGCAAATATTAGCTGGTAACCTACAGTGAGG	50	0.17392514261861694	No Hit
GGCTGCGGGGTGTGGCCATCAAGATCCCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	50	0.17392514261861694	No Hit
GGCTGCGGGATTAAAATGTCTACGTAATCTTTCTTTCATATTGATTCTTCCTTTTCTT	50	0.17392514261861694	No Hit
GGCTGCGGGACTAAAATCTGGGGATGGGAGGGCTCATTTGTTGATAAATAGCACTATT	50	0.17392514261861694	No Hit
GGCTGCGGGAAGAAAGAATTTGCCTTCTTATGCAATTTACAGCAGCATCAGCGTGATC	49	0.1704466397662446	No Hit
GGCTGCGGGATGTTCATGTGTGTGTGTGTTTAGAAGCCACAAGATAATGATAATGTTG	48	0.16696813691387227	No Hit
GGCTGCGGGGGGTTTCTAGTACATTCTTGGCTTTGCTATATCTATCTAGTGCCTGTTT	48	0.16696813691387227	No Hit
GGCTGCGGGGGGCTGGTGAGATGGCTCAGTGGGTTAGAGCACCCGACTGCTCTTCCGA	48	0.16696813691387227	No Hit
GGCTGCGGGGGGAATTCCTTCGATTCTGTTTTGCTACCCGTTGTAGCGCCGGAAGATG	46	0.1600111312091276	No Hit
GGCTGCGGGCTAAGAGGAGGATGGTCGCGTCCATGCCCTGAGTCCACCCCGGGGAAGG	46	0.1600111312091276	No Hit
GGCTGCGGGCTGCTCCAACCATTTTACGGTTTCCTTGTCAGTTGTTCTCTGCAGTTAC	45	0.15653262835675527	No Hit
GGCTGCGGGGCTAGAGGAAAATGTCCATGAGGTTCTGCAAGCGGTGGATGCTGGAGAC	45	0.15653262835675527	No Hit
GGCTGCGGGGAGGTGGGAGAGCTCTGTTAGCTCCCAAGAGACTTGGAGTAAGAAAGAT	45	0.15653262835675527	No Hit
GGCTGCGGGGCTTTCTGACCCTTTCCGGGCGTTCAAGATGTCGAAGCGAGGACGCGGT	44	0.1530541255043829	No Hit
GGCTGCGGGGTTACCTCAGGCAGTCACACAGTTTGAAGAACTGGTTGGAATGGCAGAG	42	0.14609711979963824	No Hit
GGCTGCGGGGAGGCATTCAGGCAGCGAGAGCAGAGCAGCGTAGAGCAGCACAGCTGAG	37	0.12870460553777655	No Hit
GGCTGCGGGGGAATATTAGGCTAATACCTAATATTACTTAGTAAAACTTGATTTTCAA	37	0.12870460553777655	No Hit
GGCTGCGGGGCTCTTCGCCATCTTTACCCCGGCAGGCCGACATCTATCACCATGAAGG	37	0.12870460553777655	No Hit
GGCTGCGGGAGGTAATTGTTTAGTTTATGATTTCAGATAATCATACCAGAGAACTTAA	37	0.12870460553777655	No Hit
GGCTGCGGGGCTTTTCCTGTGGGAGCAGCCGGGTAGAGAGGAGCGTGGCCTTCTCCTC	37	0.12870460553777655	No Hit
GGCTGCGGGAAGCATATCTCTATTTAATTTGATATTGGCTGTTAGTTTGCAATAAATT	36	0.12522610268540418	No Hit
GGCTGCGGGATGTAATGTACACTGTAGCTATCCTCAGATACTCCAGAAGAGGGAGTCA	36	0.12522610268540418	No Hit
GGCTGCGGGATGGTTCTAAGTTGTTTTCATTTTAAAATGATACAATAATAGCATTTGT	35	0.12174759983303185	No Hit
GGCTGCGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTCTTCCG	35	0.12174759983303185	No Hit
GGCTGCGGGGCGTCTGGTTGGCCTAGGCTCAAGCAGCCGCGGCCTGGTTGGATCTGCT	35	0.12174759983303185	No Hit
GGCTGCGGGAGCATTGCTTCTGTGTAAATTATGTACTGCAAAAATTTTTTTAAATCTT	34	0.11826909698065952	No Hit
GGCTGCGGGGTCAGGACATGGCCTGTGGCTGTGTGTTCAAACACCCCTCCCACAGGAC	34	0.11826909698065952	No Hit
GGCTGCGGGATCTTTATCTCTTCCATTTCTCCAGCTTCTCTCCCTGAGCTACCAGAAA	34	0.11826909698065952	No Hit
GGCTGCGGGGCCTTTCTCCTCGTTGGGCGTCTGAAGGCAAGATGGGTCACCAGCAGCT	34	0.11826909698065952	No Hit
GGCTGCGGGGGAAAAAGAATGCCAAAATCAGCAGCCTCCTGGAGGAGCAGTTCCAGCA	33	0.11479059412828718	No Hit
GGCTGCGGGCCTCCCAAAAGCCACCCCCACTCCTAAGAGGAGGATGGTCGCGTCCATG	32	0.11131209127591485	No Hit
GGCTGCGGGAACTGGGGTGTCTGAAATACTACTTAAAACTCAGATGAAGATGAGCCTC	32	0.11131209127591485	No Hit
GGCTGCGGGGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	32	0.11131209127591485	No Hit
GGCTGCGGGGACTTGTAAGGACACAGCCAGAGCCTTGCATACCGACTGGAGTTTTGCA	32	0.11131209127591485	No Hit
GGCTGCGGGATCTGGGGCTGTATGTAGGCCTTTGCGGGTGTTGTAGGTTTTTCTTTTT	32	0.11131209127591485	No Hit
GGCTGCGGGGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	31	0.1078335884235425	No Hit
GGCTGCGGGAAGAATCCTATGCACCAACTGTTGACTTCCCCATCTGTTCCTCAACAGA	30	0.10435508557117017	No Hit
GGCTGCGGGGAGGAGGTATGGACAAAATAGATGTAATCTCTGTCATTCTGTGTCCAGG	30	0.10435508557117017	No Hit
GGCTGCGGGAGTTTCTAATATGCTATACAATTTATGCACGCAGAAAGAAATAGCAATG	29	0.10087658271879783	No Hit
GGCTGCGGGGAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	29	0.10087658271879783	No Hit
GGCTGCGGGGGTCTCTTGCTGCAGCAACGAGAGTGGGAGCACCTGGAGCGCGAGCTCG	29	0.10087658271879783	No Hit
GGCTGCGGGGATGGAGGGGAGATTGAGCGATGCTCTTTCCTTCTCTGTTTAGGAAGAA	29	0.10087658271879783	No Hit
GGCTGCGGGATAACATTCTTCCCTCAACATTTCCTGGGCCTTTCAGGAATACCACGAC	29	0.10087658271879783	No Hit
GGCTGCGGGGCTTTTCTGACCCTTTCCGGGCGTTCAAGATGTCGAAGCGAGGACGCGG	29	0.10087658271879783	No Hit
GGCTGCGGGATTCTTTTTCTGTTTGGTGAAAAGATACCAGTAAAATGATAACATCTGG	29	0.10087658271879783	No Hit
GGCTGCGGGAGCCCTGTGTGCCGACTGGATATTGAGCCCAGGTCCTCAAAGACACAGG	29	0.10087658271879783	No Hit

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTATAGG	15	0.0071063335	52.078533	23
CCTAATG	15	0.0071063335	52.078533	23
GCCTAAT	15	0.0071063335	52.078533	22
ATAGGAA	15	0.0071063335	52.078533	25
GGTCACA	30	7.6426477E-7	52.078533	24
CTAATGT	15	0.0071063335	52.078533	24
ATGTTCC	15	0.0071063335	52.078533	27
AGGTCAC	30	7.6426477E-7	52.078533	23
CAAGGTG	15	0.0071063335	52.078533	22
CTATGTG	15	0.0071063335	52.078533	21
GGGCGTT	15	0.0071063335	52.078533	27
CAGGTCA	30	7.6426477E-7	52.078533	22
ATCAACA	15	0.0071063335	52.078533	27
GCCTGTG	15	0.0071063335	52.078533	21
ATACATC	15	0.0071063335	52.078533	23
CCTAGGG	15	0.0071063335	52.078533	23
TACTATA	15	0.0071063335	52.078533	21
ACTATAG	15	0.0071063335	52.078533	22
GGTCCCG	25	1.6003381E-5	52.07853	26
GTCCCGT	25	1.6003381E-5	52.07853	27

Summary

Basic Statistics

Per base sequence quality

Per tile sequence quality

Per sequence quality scores

Per base sequence content

Per sequence GC content

Per base N content

Sequence Length Distribution

Sequence Duplication Levels

Overrepresented sequences

Adapter Content

Kmer Content