SRR212678_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR212678_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	58151
Sequences flagged as poor quality	0
Sequence length	56
%GC	53

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

Sequence	Count	Percentage	Possible Source
CTTCTGGGGCCTTTTCCTGTGGGAGCAGCCGGGTAGAGAGGAGCGTGGCCTTCTCC	1687	2.9010679094082645	No Hit
CTTCTGGGGGCCTTTTCCTGTGGGAGCAGCCGGGTAGAGAGGAGCGTGGCCTTCTC	1148	1.974170693539234	No Hit
CTTCTGGGGGGGAATTCCTTCGATTCTGTTTTGCTACCCGTTGTAGCGCCGGAAGA	925	1.590686316658355	No Hit
CTTCTGGGGAAGCAGTGGTATCAACGCAGAGTCGACTTTTTTTTTTTTTTTTTTTT	909	1.5631717425323728	No Hit
CTTCTGGGGGCTTTTCCTGTGGGAGCAGCCGGGTAGAGAGGAGCGTGGCCTTCTCC	882	1.5167408986947775	No Hit
CTTCTGGGGGGGAATTCCTTCGGCAACATTAACTGGTTGATGCTGAAAAACATCGA	769	1.322419218930027	No Hit
CTTCTGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTCTTCC	736	1.2656704097951883	No Hit
CTTCTGGGGGCCTTCCTTTTCCTGTGGGAGCAGCCGGGTAGAGAGGAGCGTGGCCT	422	0.7256968925727847	No Hit
CTTCTGGGGGCTTTTTTCCTGTGGGAGCAGCCGGGTAGAGAGGAGCGTGGCCTTCT	394	0.6775463878523155	No Hit
CTTCTGGGGGGGGCTAGTGAGATGGCTCAATGGGTAAGAGCACCCGACTGCTCTTC	386	0.6637891007893243	No Hit
CTTCTGGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTCTTC	365	0.6276762222489726	No Hit
CTTCTGGGGGGACAAGTCTTTCCTTTTCCTGTGGGAGCAGCCGGGTAGAGAGGAGC	341	0.586404361059999	No Hit
CTTCTGGGGGCTCTTCCTGTCTGTATCAGGACGGCGCGTGGTCCACGCCGAGCGAC	339	0.5829650392942511	No Hit
CTTCTGGGGGACATAGGGTGTTGAGGTATTGCAGTATTCATGATAAGGTCTGCTAG	285	0.49010335161906077	No Hit
CTTCTGGGGGGTTGGTCCGAGAGTAGTGGTGTTTACAACTAATTGATCACAACCAG	256	0.4402331860157177	No Hit
CTTCTGGGGGGGGAGCAGCCGGGTAGAGAGGAGCGTGGCCTTCTCCTCTCCCCGTC	251	0.43163488160134816	No Hit
CTTCTGGGGGCTCTTTCCGTTCCTAGCGCAGCCATGGCTCGTGGTCCCAAGAAACA	243	0.417877594538357	No Hit
CTTCTGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGTTCTTCC	209	0.3594091245206445	No Hit
CTTCTGGGGGGAATTCCTTCGGCAACATTAACTGGTTGATGCTGAAAAACATCGAA	201	0.3456518374576533	No Hit
CTTCTGGGGCTCTTCCTGTCTGTATCAGGACGGCGCGTGGTCCACGCCGAGCGACT	198	0.34049285480903163	No Hit
CTTCTGGGGGAATGGAGAAACTCCCAAGGATCTTAGTGATGAGAAGCAGAAGAAAA	190	0.32673556774604046	No Hit
CTTCTGGGGCCTTTTCCTGTGGGAGCAGCCGGGTAGAGAGGAGCGGGGCCTTCTCC	163	0.28030472390844524	No Hit
CTTCTGGGGAGGCAAGGCAAATGGACTGTGGAAAAAAATAAATTCTTTTTTGTTTC	159	0.27342608037694965	No Hit
CTTCTGGGGGGAATTCCTTCGATTCTGTTTTGCTACCCGTTGTAGCGCCGGAAGAT	155	0.26654743684545407	No Hit
CTTCTGGGGGAGTCGACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	151	0.2596687933139585	No Hit
CTTCTGGGGGTGCGTGCTTAGGACCACCGTGGCAGCTTGAGGGCGGCCTAGAGGCC	148	0.2545098106653368	No Hit
CTTCTGGGGGGGCTGGAGGGATGGCTCAGCAGTTAAGAACACTCACTGATTGTTCT	146	0.251070488899589	No Hit
CTTCTGGGGGGCAAAACAAGAGGCTGGGGATTGCGTTAGCGAGAAACCAGTTCTCG	140	0.24075252360234561	No Hit
CTTCTGGGGGGGAATTCCTGGCACTGGCTGGGTTCGCTACCGTAGCGCAGGCCGCC	128	0.22011659300785885	No Hit
CTTCTGGGGGGGCTGGAGAGATGGCTCAGCAGTTAAGAGCACTGACTGCTCTTCCG	126	0.21667727124211103	No Hit
CTTCTGGGGGGGGCTGGAGAGATGGCTCAGTGGTTAAGAGCACCGTCTGCTCTTCC	125	0.21495761035923716	No Hit
CTTCTGGGGGAACTACAAGCCTCCAGCCCAGAAGAGCATCCAGGAGATCCAGGAAC	116	0.1994806624133721	No Hit
CTTCTGGGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTCTT	115	0.1977610015304982	No Hit
CTTCTGGGGGTATCTCGGCTGCCTCGTGGTCAGGAAGCCATGGAAGGAGACTAGTG	111	0.19088235799900258	No Hit
CTTCTGGGGGCTCTCCGCCAGATCGCCGCCATCATGGACACGAGTCGCGTGCAGCC	109	0.18744303623325478	No Hit
CTTCTGGGGGGGGAATTCCTTCGATTCTGTTTTGCTACCCGTTGTAGCGCCGGAAG	107	0.184003714467507	No Hit
CTTCTGGGGGAAGAAGGGAGACAGTTCTGTAAGTCCTGCGGGGCGGCAGAGGTCCG	107	0.184003714467507	No Hit
CTTCTGGGGGGGGTTGGGGATTTAGCTCAGTGGTAAAGTGCTTGCCTAGCAAGCCC	106	0.18228405358463312	No Hit
CTTCTGGGGGGCATCCTTCCGGCTCCGTCGTGGAAGGAGGACTGCGCCTCGTCTTC	104	0.17884473181888533	No Hit
CTTCTGGGGATTACAATTAAATGACTTGACTGCATTTATTTTTACTTAATTTGTTC	104	0.17884473181888533	No Hit
CTTCTGGGGGACATAGGGTGTTGAGGTATTGCAGTATTCATGATAGGGTCTGCTAG	103	0.1771250709360114	No Hit
CTTCTGGGGATGGGGGGTTGTATTTATAGGGTGAGGAGGGACTAGATGTCCGAGGA	101	0.1736857491702636	No Hit
CTTCTGGGGGAGTCCGACTGCCGCTGTAGATCACGCGGCTGCAGCTTCCCGGACTC	99	0.17024642740451582	No Hit
CTTCTGGGGAGGGCACACCCGGTGAGGACACAGGCGTGTGTTTGGAGACATTATAA	98	0.16852676652164195	No Hit
CTTCTGGGGACACCCTTCGCTGACTCCACCGATCCGCCGGAACGAAAGCGGGTCCC	98	0.16852676652164195	No Hit
CTTCTGGGGGGGGAATTCCTTCGGCAACATTAACTGGTTGATGCTGAAAAACATCG	98	0.16852676652164195	No Hit
CTTCTGGGGGCTTTTCCTGTGGGAGCAGCCGGGTAGAGAGGAGCGGGGCCTTCTCC	97	0.16680710563876802	No Hit
CTTCTGGGGACCAAGGGTGTGCAGTACCTGAATGAGATCAAGGACAGTGTGGTGGC	94	0.16164812299014633	No Hit
CTTCTGGGGAGAGCAGCGCCTTGGAGGTCCCGTGGATCTGTGTCTTGCTTCAACAG	93	0.15992846210727243	No Hit
CTTCTGGGGATGCCACAACTAGATACATCAACATGATTTATCACAATTATCTCATC	90	0.15476947945865074	No Hit
CTTCTGGGGATCAGTGTGGGCCTGGAGTTACTACCTGCAGCTTCAGGACTTACCTG	90	0.15476947945865074	No Hit
CTTCTGGGGGCCTTTTCCTGTGGGAGCAGCCGGGTAGAGAGGAGCGGGGCCTTCTC	88	0.15133015769290295	No Hit
CTTCTGGGGGTCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTCTTCTG	86	0.14789083592715516	No Hit
CTTCTGGGGGCTCTTTCCGTTCCTAGCGCAGCCATGGCTCGTGGGCCCAAGAAACA	84	0.14445151416140736	No Hit
CTTCTGGGGGCTTTTTCCTGTGGGAGCAGCCGGGTAGAGAGGAGCGTGGCCTTCTC	83	0.14273185327853347	No Hit
CTTCTGGGGGAGAGCAGCGCCTTGGAGGTCCCGTGGATCTGTGTCTTGCTTCAACA	82	0.14101219239565957	No Hit
CTTCTGGGGGCTCTCGGTCTTAGCGCCATCTTCCTTGAGACTCCTGCGCCATGAGA	82	0.14101219239565957	No Hit
CTTCTGGGGATGGAACAGAAATGTGAGAGATAATTGTGTCTTTTGTGTTTATGATA	80	0.13757287062991178	No Hit
CTTCTGGGGGGCTGGAGAGATGGCTTAGTGGGTAAGAGCACCAACTGTTCTTCCGA	79	0.13585320974703788	No Hit
CTTCTGGGGGATCTCCAGGCGGCTTTTGGGCTCCAGAGGCTGTGTGCTCGCCGAGG	78	0.13413354886416398	No Hit
CTTCTGGGGATGGCCTACCCATTCCAACTTGGTCTACAAGACGCCACATCCCCTAT	78	0.13413354886416398	No Hit
CTTCTGGGGTCTTCCTGTCTGTATCAGGACGGCGCGTGGTCCACGCCGAGCGACTG	70	0.12037626180117281	No Hit
CTTCTGGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCTGACTGCTCTTC	69	0.1186566009182989	No Hit
CTTCTGGGGAAGCAGTGGTATCAACGCAGAGTGCAGTGCTCTTCTGGGGAAGCAGT	69	0.1186566009182989	No Hit
CTTCTGGGGGCTTTTTCGCAACGGGTTTGCCGTCAGGACGCAGGTGTTGTGAAAAC	69	0.1186566009182989	No Hit
CTTCTGGGGGCCTTTCGCTGCTGCGGCCGCAGCCATGAGTATGCTCAGGCTACAGA	68	0.11693694003542501	No Hit
CTTCTGGGGACATGTGAAAGACAAATGCACATGATGAAAACTAAAATCTTTACAAA	67	0.1152172791525511	No Hit
CTTCTGGGGAAGTTTTTTGTTGTTGGTGGTAGTGGTTTTTTATATATATATATATA	67	0.1152172791525511	No Hit
CTTCTGGGGGCTTTCTGACCCTTTCCGGGCGTTCAAGATGTCGAAGCGAGGACGCG	67	0.1152172791525511	No Hit
CTTCTGGGGGTCCCTCACCCTCCCAAAAGCCACCCCCACTCCTAAGAGGAGGATGG	66	0.11349761826967722	No Hit
CTTCTGGGGGCTTTCCTTTCGCTGCTGCGGCCGCAGCCATGAGTATGCTCAGGCTA	65	0.11177795738680331	No Hit
CTTCTGGGGCTCACAACAACTACCAGGCCCAGTCCGCTGTTCCCCTGCGCCATGAG	63	0.10833863562105552	No Hit
CTTCTGGGGGCTTTTTAGTTAGTGCTGGAACGTGGAGGAAGCTGCTCCCTCCGAAG	62	0.10661897473818163	No Hit
CTTCTGGGGGGGAATTCCTGGCACTGGCTGGGTTCGCTACCGTAGCGCAGGCCGCT	62	0.10661897473818163	No Hit
CTTCTGGGGGGGAATTCCTGGCACTGGCTGGGTTCGCTACCGGAGCGCAGGCCGCC	62	0.10661897473818163	No Hit
CTTCTGGGGGCCTTTCCGCTCGGCCGTTCTCCTGTATAGGAGGCAGCCATGGCGCC	61	0.10489931385530772	No Hit
CTTCTGGGGGCTCTTAGAACCTTCCTGCGGTCGTGCTTGCATCTCGCTGCTGCAGC	61	0.10489931385530772	No Hit
CTTCTGGGGAGGCTTAATGAATTCTAAGTCTATTGGTCCTGCAGAGTGATGTTGAT	61	0.10489931385530772	No Hit
CTTCTGGGGGCTCTTCGGACTTGGGCTTGGGTTCCGGCGACATGGCTAAACGCACC	59	0.10145999208955993	No Hit

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTGTTTC	20	4.013337E-4	50.342014	50
AGAAACA	55	0.0	50.342014	50
ACTAGTG	20	4.013337E-4	50.342014	50
CCCCTAT	20	4.013337E-4	50.342014	50
CATCGAA	20	4.013337E-4	50.342014	50
AGGTCCG	15	0.008167602	50.34201	50
CAGACCG	15	0.008167602	50.34201	50
CGCACTC	15	0.008167602	50.34201	50
TCTTCGG	15	0.008167602	50.34201	50
AAGTTCA	15	0.008167602	50.34201	50
TCCCCTA	20	4.0305854E-4	50.298355	49
GACTAGT	20	4.0305854E-4	50.298355	49
TCTGCTA	30	9.8907E-7	50.29835	49
GCGCACT	15	0.008195697	50.29835	49
TCCCCGT	30	9.8907E-7	50.29835	49
ATCCCCT	20	4.065259E-4	50.211258	48
TGATCAC	20	4.065259E-4	50.211258	44
ACATCCC	20	4.065259E-4	50.211258	46
AGGTCTG	20	4.065259E-4	50.211258	46
GATCACA	20	4.065259E-4	50.211258	45

Summary

Basic Statistics

Per base sequence quality

Per tile sequence quality

Per sequence quality scores

Per base sequence content

Per sequence GC content

Per base N content

Sequence Length Distribution

Sequence Duplication Levels

Overrepresented sequences

Adapter Content

Kmer Content