SRR212598_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR212598_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	94885
Sequences flagged as poor quality	0
Sequence length	56
%GC	54

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

Sequence	Count	Percentage	Possible Source
CACAAGGGGGCCTTTTCCTGTGGGAGCAGCCGGGTAGAGAGGAGCGTGGCCTTCTC	2666	2.8097170258734256	No Hit
CACAAGGGGCCTTTTCCTGTGGGAGCAGCCGGGTAGAGAGGAGCGTGGCCTTCTCC	1623	1.7104916477841599	No Hit
CACAAGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTCTTCC	1600	1.6862517784686726	No Hit
CACAAGGGGGCTTTTCCTGTGGGAGCAGCCGGGTAGAGAGGAGCGTGGCCTTCTCC	1358	1.4312061969752858	No Hit
CACAAGGGGGCTCTTCCTGTCTGTATCAGGACGGCGCGTGGTCCACGCCGAGCGAC	1298	1.3679717552827106	No Hit
CACAAGGGGGGGAATTCCTTCGGCAACATTAACTGGTTGATGCTGAAAAACATCGA	1031	1.0865784897507509	No Hit
CACAAGGGGAAGCAGTGGTATCAACGCAGAGTCGACTTTTTTTTTTTTTTTTTTTT	999	1.0528534541813774	No Hit
CACAAGGGGGGGAATTCCTTCGATTCTGTTTTGCTACCCGTTGTAGCGCCGGAAGA	898	0.9464088106655425	No Hit
CACAAGGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTCTTC	744	0.7841070769879327	No Hit
CACAAGGGGGAGTAAGATACTTTCAGTTTTGTTCATTTTTCAGAAGCTACTGTAAA	607	0.6397217684565527	No Hit
CACAAGGGGGAGAGCAGCGCCTTGGAGGTCCCGTGGATCTGTGTCTTGCTTCAACA	598	0.6302366022026664	No Hit
CACAAGGGGGCTCTTTCCGTTCCTAGCGCAGCCATGGCTCGTGGTCCCAAGAAACA	473	0.49849818200980134	No Hit
CACAAGGGGCTCTTCCTGTCTGTATCAGGACGGCGCGTGGTCCACGCCGAGCGACT	437	0.46055751699425623	No Hit
CACAAGGGGAGTCAAAACGCCTTGTTAAAAAGAAACGAGCTTTAAAATCATGTTTA	415	0.4373715550403119	No Hit
CACAAGGGGGCTTTTTTCCTGTGGGAGCAGCCGGGTAGAGAGGAGCGTGGCCTTCT	406	0.4278863887864257	No Hit
CACAAGGGGACCTTTTCCTGTGGGAGCAGCCGGGTAGAGAGGAGCGTGGCCTTCTC	388	0.40891605627865313	No Hit
CACAAGGGGAGAGCAGCGCCTTGGAGGTCCCGTGGATCTGTGTCTTGCTTCAACAG	370	0.38994572377088055	No Hit
CACAAGGGGCTTTTCCTGTGGGAGCAGCCGGGTAGAGAGGAGCGTGGCCTTCTCCT	368	0.3878379090477947	No Hit
CACAAGGGGGCCTTTTTCCTGTGGGAGCAGCCGGGTAGAGAGGAGCGTGGCCTTCT	320	0.3372503556937345	No Hit
CACAAGGGGAGGGTTTTTCTGTGTATTTATAGCTGTCCTGGAATTGTTCTGTAGAC	318	0.3351425409706487	No Hit
CACAAGGGGGGGTATATTAGCCTGGGCTGGCATTTGTGTTCTCTTAGTGTCTGTAT	314	0.330926911524477	No Hit
CACAAGGGGGCCTTTTCCTGTGGGAGCAGCCGGGTAGAGAGGAGCGGGGCCTTCTC	296	0.3119565790167044	No Hit
CACAAGGGGATGCCACAACTAGATACATCAACATGATTTATCACAATTATCTCATC	285	0.3003635980397323	No Hit
CACAAGGGGGAGTCGACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	250	0.2634768403857301	No Hit
CACAAGGGGGGAGCAGCGCCTTGGAGGTCCCGTGGATCTGTGTCTTGCTTCAACAG	249	0.2624229330241872	No Hit
CACAAGGGGGGGCTGGTGAGATGGCTCAGTGGGTTAGAGCACCCGACTGTTCTTCA	239	0.25188385940875796	No Hit
CACAAGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCTGACTGCTCTTCC	227	0.23923697107024294	No Hit
CACAAGGGGGGGCTGGTGAGATGGCTCAGTGGGTTAGAGCACCCGACTGCTCTTCC	227	0.23923697107024294	No Hit
CACAAGGGGGCTCTTTCCGTTCCTAGCGCAGCCATGGCTCGTGGGCCCAAGAAACA	223	0.23502134162407123	No Hit
CACAAGGGGATGGCCTACCCATTCCAACTTGGTCTACAAGACGCCACATCCCCTAT	217	0.22869789745481373	No Hit
CACAAGGGGGGGGCTAGTGAGATGGCTCAATGGGTAAGAGCACCCGACTGCTCTTC	214	0.22553617537018497	No Hit
CACAAGGGGGGGGGCTGGTGAGATGGCTCAGCAGGTAAGAGCACCCGACTGCTCTT	214	0.22553617537018497	No Hit
CACAAGGGGGCTCTCCGCCAGATCGCCGCCATCATGGACACGAGTCGCGTGCAGCC	202	0.21288928703166993	No Hit
CACAAGGGGAAGATAAAAGAAAAACAGAAGAGGAAGATAAATCACAATCATTTATG	199	0.20972756494704115	No Hit
CACAAGGGGGGAATTCCTTCGGCAACATTAACTGGTTGATGCTGAAAAACATCGAA	194	0.20445802813932656	No Hit
CACAAGGGGATGCTAACAAGATACGCTCGGACCCAGTTTGTCAGTCCTTGGAGAGA	191	0.2012963060546978	No Hit
CACAAGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGTTCTTCC	190	0.20024239869315488	No Hit
CACAAGGGGGGGGCTGGTGAGATGACTCAGTGGGTAAGAGCACCCGACTGCTCTTC	190	0.20024239869315488	No Hit
CACAAGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTCTTCT	188	0.19813458397006903	No Hit
CACAAGGGGCCTTTTCCTGTGGGAGCAGCCGGGTAGAGAGGAGCGGGGCCTTCTCC	188	0.19813458397006903	No Hit
CACAAGGGGAGTGCAGTGCTCACAAGGGGGCTTTTCCTGTGGGAGCAGCCGGGTAG	180	0.18970332507772567	No Hit
CACAAGGGGACAGGGCAGGGTGTTGGGTAGGGTTTCTAAGCTATAGGTGTGTTACC	173	0.1823259735469252	No Hit
CACAAGGGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTCTT	156	0.16440954840069558	No Hit
CACAAGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTCTTCCG	154	0.16230173367760972	No Hit
CACAAGGGGGGGCTGGTGAGATGGCTCAGGGGGTAAGAGCACCCGACTGCTCTTCC	152	0.1601939189545239	No Hit
CACAAGGGGGGGCTGGAGAGATGGCTCAGTGGTTAAGAGCACCGACTGTTCTTCCG	145	0.15281656742372346	No Hit
CACAAGGGGGCTCTCGGTCTTAGCGCCATCTTCCTTGAGACTCCTGCGCCATGAGA	144	0.15176266006218053	No Hit
CACAAGGGGGAGCAGCGCCTTGGAGGTCCCGTGGATCTGTGTCTTGCTTCAACAGT	143	0.1507087527006376	No Hit
CACAAGGGGAGCAGTTTCCTCAACCAGCGCTGTCCCACCGGTGGCTCCGTGGTTTC	141	0.14860093797755178	No Hit
CACAAGGGGGCTTTTCCTGTGGGAGCAGCCGGGTAGAGAGGAGCGGGGCCTTCTCC	140	0.14754703061600885	No Hit
CACAAGGGGCTCTTTCCGTTCCTAGCGCAGCCATGGCTCGTGGTCCCAAGAAACAC	137	0.1443853085313801	No Hit
CACAAGGGGACGTCTGGCGGGGAAACTCACCGCCTCAGCAGCTCAGCTAAAACCCT	137	0.1443853085313801	No Hit
CACAAGGGGGGGGAATTCCTTCGGCAACATTAACTGGTTGATGCTGAAAAACATCG	137	0.1443853085313801	No Hit
CACAAGGGGGGGCTGGCGAGATGGCTCAGTGGTTAAGAGCGCCGACTGCTCTTCTG	131	0.13806186436212256	No Hit
CACAAGGGGGGCTCTCTGCTCCTCCCTGTTCCAGAGACGGCCGCATCTTCTTGTGC	130	0.13700795700057963	No Hit
CACAAGGGGGCTCTTCGGACTTGGGCTTGGGTTCCGGCGACATGGCTAAACGCACC	129	0.1359540496390367	No Hit
CACAAGGGGGCTTCCTGTCTGTATCAGGACGGCGCGTGGTCCACGCCGAGCGACTG	127	0.13384623491595088	No Hit
CACAAGGGGGCAGAGTGCAGTGCTCACAAGGGGGCTTTTCCTGTGGGAGCAGCCGG	124	0.13068451283132212	No Hit
CACAAGGGGGGTCTTGAGTTCAAATCCCAACAACCACATGGTGGCTTAGAACCTTC	121	0.12752279074669337	No Hit
CACAAGGGGGGGAATTCCTTCGGCAACATTAACTGGTTGATGCTGAAAAAACATCG	118	0.1243610686620646	No Hit
CACAAGGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGTTCTTC	118	0.1243610686620646	No Hit
CACAAGGGGACTAATCCTAGCCCTAGCCCTACACAAATATAATTATACTATTATAT	118	0.1243610686620646	No Hit
CACAAGGGGGGGGCTGGAGAGATGGCTCAGCGGTTAAGAGCACTGACTGCTCTTCC	116	0.12225325393897878	No Hit
CACAAGGGGGCTCTTTTCCTCTGGCGCGCCACCGACGATCCTATTGTCATCATGGG	114	0.12014543921589292	No Hit
CACAAGGGGGCTTTTTCGCAACGGGTTTGCCGTCAGGACGCAGGTGTTGTGAAAAC	113	0.11909153185435001	No Hit
CACAAGGGGGGACTGGAGAGATGGCTCAGCGGTTAAGAGCACTGACTGCTCTTCCA	111	0.11698371713126415	No Hit
CACAAGGGGGGGCTGGTGAGATGGCTCAGCGGGTAAGAGCACCCGACTGCCCTTCC	110	0.11592980976972123	No Hit
CACAAGGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCGACTGCTCTTCT	107	0.11276808768509249	No Hit
CACAAGGGGGGAATTCCTGGCACTGGCTGGGTTCGCTACCGTAGCGCAGGCCGCCC	105	0.11066027296200663	No Hit
CACAAGGGGGGGCTGGTGAGATGGCTCAGCGGGTAAGAGCACTGACTGCTCTTCCA	104	0.1096063656004637	No Hit
CACAAGGGGGGGGTTGGGGATTTAGCTCAGTGGTAAAGTGCTTGCCTAGCAAGCCC	104	0.1096063656004637	No Hit
CACAAGGGGATTGTAAATGTATACGTTGGAACTAGACTCCACAACTATACATTTTG	103	0.1085524582389208	No Hit
CACAAGGGGGGGGAATTCCTTCGATTCTGTTTTGCTACCCGTTGTAGCGCCGGAAG	101	0.10644464351583496	No Hit
CACAAGGGGCTCTCGCCAGGCGTCCTCGTTGGAGTGACATCGTCTTTAAACCCCGC	101	0.10644464351583496	No Hit
CACAAGGGGGGCTAGAGAGATGGCTCAGCGGTTAAGAGCACTGACTGCTCTTCCTA	100	0.10539073615429204	No Hit
CACAAGGGGGTGTTCTTTATTAATATCCTAACACTCCTCGTCCCCATTCTAATCGC	99	0.10433682879274911	No Hit
CACAAGGGGTGCCCTCCGTCCGATATGCCCACACTCCAGCTGCTACTGGTTCCCTC	98	0.10328292143120618	No Hit
CACAAGGGGAGTGGGACGTTGCTGAAGCCCGCAAGATCTGGTGCTTTGGCCCTGAT	98	0.10328292143120618	No Hit
CACAAGGGGGCCTTTCTGACCCTTTCCGGGCGTTCAAGATGTCGAAGCGAGGACGC	98	0.10328292143120618	No Hit
CACAAGGGGGCTTTTCCTCAGCTGCCGCCAAGGTGCTCGGTCCTTCCGAGGGAGCT	97	0.10222901406966328	No Hit
CACAAGGGGGCTGTGGGAGCAGCCGGGTAGAGAGGAGCGTGGCCTTCTCCTCTCCC	96	0.10117510670812037	No Hit
CACAAGGGGGGGCTGGGGAGTTAGCCCAGTGGTTAAGAGCACTGACTGCTCTTCCA	95	0.10012119934657744	No Hit

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTGTTAT	25	2.0257441E-5	50.19449	49
AATCATT	40	2.5484042E-9	50.19449	46
AATCATG	35	5.063157E-8	50.19449	46
TAAAATC	35	5.063157E-8	50.19449	43
CACAATC	40	2.5484042E-9	50.19449	43
GGCCGCT	20	4.0852395E-4	50.19449	49
GTTTTTG	20	4.0852395E-4	50.19449	50
CAATCAT	40	2.5484042E-9	50.19449	45
TGATATG	40	2.5484042E-9	50.19449	50
TGTTATG	25	2.0257441E-5	50.19449	50
GAATGAC	20	4.0852395E-4	50.19449	50
TCAGCTA	35	5.063157E-8	50.19449	43
GTAAGTT	20	4.0852395E-4	50.19449	46
TTGATAT	40	2.5484042E-9	50.19449	49
CTAAAAC	35	5.063157E-8	50.19449	47
GTGGTTT	20	4.0852395E-4	50.19449	49
AAAATCA	35	5.063157E-8	50.19449	44
GTGCGCC	25	2.0257441E-5	50.19449	42
CCTAGCA	20	4.0852395E-4	50.19449	45
TTGCCTA	20	4.0852395E-4	50.19449	42

Summary

Basic Statistics

Per base sequence quality

Per tile sequence quality

Per sequence quality scores

Per base sequence content

Per sequence GC content

Per base N content

Sequence Length Distribution

Sequence Duplication Levels

Overrepresented sequences

Adapter Content

Kmer Content