SRR212579_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR212579_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	201037
Sequences flagged as poor quality	0
Sequence length	56
%GC	44

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

$Per base sequence content$

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

Sequence	Count	Percentage	Possible Source
TATGTAGGGAAGCAGTGGTATCAACGCAGAGTCGACTTTTTTTTTTTTTTTTTTTT	4913	2.443828747941921	No Hit
TATGTAGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTCTTC	1522	0.7570745683630377	No Hit
TATGTAGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTCTTCC	1453	0.7227525281415859	No Hit
TATGTAGGGGCCTTTTCCTGTGGGAGCAGCCGGGTAGAGAGGAGCGTGGCCTTCTC	1252	0.6227709327138785	No Hit
TATGTAGGGGCTCTTCCTGTCTGTATCAGGACGGCGCGTGGTCCACGCCGAGCGAC	1057	0.5257738625228192	No Hit
TATGTAGGGGCTTTTCCTGTGGGAGCAGCCGGGTAGAGAGGAGCGTGGCCTTCTCC	942	0.46857046215373294	No Hit
TATGTAGGGGGGAATTCCTTCGATTCTGTTTTGCTACCCGTTGTAGCGCCGGAAGA	730	0.36311723712550426	No Hit
TATGTAGGGGGGAATTCCTTCGGCAACATTAACTGGTTGATGCTGAAAAACATCGA	660	0.32829777603127785	No Hit
TATGTAGGGATGGAAATAGTCTGTGATGTTCTTGTCAACATTCAGTATTTGATTAC	649	0.3228261464307565	No Hit
TATGTAGGGAAGCAGTGGTATCAACGCAGAGTGCAGTGCTTATGTAGGGAAGCAGT	540	0.26860727129831824	No Hit
TATGTAGGGGAGTCGACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	496	0.24672075289623305	No Hit
TATGTAGGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTCTT	483	0.24025428155016243	No Hit
TATGTAGGGGGGCTGGTGAGATGGCTCAGTGGGTTAGAGCACCCGACTGCTCTTCC	474	0.23577749369519044	No Hit
TATGTAGGGGTCCTGTGGGAGCAGCCGGGTAGAGAGGAGCGTGGCCTTCTCCTCTC	441	0.21936260489362652	No Hit
TATGTAGGGGGGGCTGGTGAGATGGCTCAGTGGGTTAGAGCACCCGACTGCTCTTC	431	0.2143883961658799	No Hit
TATGTAGGGGGGGCTCCTGTTTGAGCTGGTTATTGTTGCTCCTCTGAGGGTCCCTC	424	0.21090645005645728	No Hit
TATGTAGGGTGAGCTTGGACAGGAGATGCCGCATCCTGCAGGGAGCCTGGAGAAGT	409	0.20344513696483732	No Hit
TATGTAGGGGCTCTTTCCGTTCCTAGCGCAGCCATGGCTCGTGGTCCCAAGAAACA	408	0.20294771609206266	No Hit
TATGTAGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTCTTCCG	387	0.1925018777637947	No Hit
TATGTAGGGAGAGCAGCGCCTTGGAGGTCCCGTGGATCTGTGTCTTGCTTCAACAG	331	0.16464630888841356	No Hit
TATGTAGGGGGGGCTGGCGAGATGGCTCAGTGGTTAAGAGCGCCGACTGCTCTTCT	321	0.15967210016066694	No Hit
TATGTAGGGGGAATTCCTTCGATTCTGTTTTGCTACCCGTTGTAGCGCCGGAAGAT	309	0.153703049687371	No Hit
TATGTAGGGGCTCTCCGCCAGATCGCCGCCATCATGGACACGAGTCGCGTGCAGCC	288	0.14325721135910305	No Hit
TATGTAGGGTACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAG	287	0.1427597904863284	No Hit
TATGTAGGGGGAATTCCTTCGGCAACATTAACTGGTTGATGCTGAAAAACATCGAA	275	0.13679074001303243	No Hit
TATGTAGGGATTGTTAACAAGCAAATGGTGTTTCGGTTAGTAACGGTTCTAAGTGC	271	0.13480105652193378	No Hit
TATGTAGGGGTCGACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	269	0.13380621477638444	No Hit
TATGTAGGGGCTCTTTCCGTTCCTAGCGCAGCCATGGCTCGTGGGCCCAAGAAACA	264	0.13131911041251113	No Hit
TATGTAGGGCAGAGTCGACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	260	0.12932942692141247	No Hit
TATGTAGGGATCATAAGGGAGGAAAATGTCCCAAAAAGCAGAGAGAAATATCTCTC	248	0.12336037644811652	No Hit
TATGTAGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGGGCACCCGACTGCTCTTC	241	0.11987843033869387	No Hit
TATGTAGGGAGTCGACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	241	0.11987843033869387	No Hit
TATGTAGGGGTGTGGCCATCAAGATCCCCAAAAAAAAAAAAAAAAAAAAAAAAAAA	237	0.11788874684759522	No Hit
TATGTAGGGGCTCCTTAAGCTCTCTTCCTTGTCCTGGCCAGAGGTCAATTTCCCTC	223	0.11092485462874993	No Hit
TATGTAGGGCCATCTCATCCCTGAGCCATGATCAAACTCTACGTACTGAGTCGGAG	217	0.10794032939210195	No Hit
TATGTAGGGATGGCCTACCCATTCCAACTTGGTCTACAAGACGCCACATCCCCTAT	209	0.10396096240990464	No Hit
TATGTAGGGGGGGAATTCCTTCGGCAACATTAACTGGTTGATGCTGAAAAACATCG	202	0.10047901630048199	No Hit

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTTGACA	20	4.0719303E-4	50.255207	50
TTCAATA	15	0.008253087	50.255207	50
ATATCCC	15	0.008253087	50.255207	50
TGATTAC	70	0.0	50.255207	50
TTTTACG	15	0.008253087	50.255207	50
CGGCCAC	15	0.008261279	50.2426	46
TTTCAAT	15	0.008261279	50.2426	49
TATTATA	15	0.008261279	50.2426	49
CGATGCA	25	2.0224728E-5	50.2426	47
CGCAACT	15	0.008261279	50.2426	47
CGTCCGC	15	0.008261279	50.2426	48
TCGCCAA	20	4.0820282E-4	50.23	42
CATGCGG	20	4.0820282E-4	50.23	42
CTAAGGT	15	0.008269477	50.23	43
CCCACTT	15	0.008269477	50.23	43
TGTTGGG	30	1.0109779E-6	50.23	43
CACTATT	30	1.0109779E-6	50.23	45
TCTAAGG	15	0.008269477	50.23	42
TAAGGTA	15	0.008269477	50.23	44
CGATGGA	15	0.008269477	50.23	44

Summary