SRR212510_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR212510_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	39337
Sequences flagged as poor quality	0
Sequence length	58
%GC	51

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

Sequence	Count	Percentage	Possible Source
CTGTGTGGGGGGAATTCCTTCGGCAACATTAACTGGTTGATGCTGAAAAACATCGAAC	797	2.0260823143605258	No Hit
CTGTGTGGGGGGAATTCCTTCGATTCTGTTTTGCTACCCGTTGTAGCGCCGGAAGATG	326	0.8287363042428247	No Hit
CTGTGTGGGCCTTTTCCTGTGGGAGCAGCCGGGTAGAGAGGAGCGTGGCCTTCTCCTC	252	0.6406182474515087	No Hit
CTGTGTGGGAGAGTGCAGTACTCTGTGTGGGGAGTGCAGTGCTCTGTGTGGGGCCTTT	241	0.6126547525230699	No Hit
CTGTGTGGGTTTCCTGTGGGAGCAGCCGGGTAGAGAGGAGCGTGGCCTTCTCCTCTCC	175	0.4448737829524366	No Hit
CTGTGTGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTCTTCCGA	156	0.39657320080331493	No Hit
CTGTGTGGGAAGCAGTGGTATCAACGCAGAGTCGACTTTTTTTTTTTTTTTTTTTTTT	152	0.3864046571929735	No Hit
CTGTGTGGGATTTGGCTCTGGTTATCTTCAGGGATGCTGTTGGCTCATGATCCAAACT	146	0.37115184177746147	No Hit
CTGTGTGGGGCTCTTTTCCTCTGGCGCGCCACCGACGATCCTATTGTCATCATGGGCC	127	0.32285125962833977	No Hit
CTGTGTGGGGAGAGCAGCGCCTTGGAGGTCCCGTGGATCTGTGTCTTGCTTCAACAGT	126	0.3203091237257544	No Hit
CTGTGTGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTCTTCCG	111	0.2821770851869741	No Hit
CTGTGTGGGGCTTTCTGACCCTTTCCGGGCGTTCAAGATGTCGAAGCGAGGACGCGGT	110	0.2796349492843887	No Hit
CTGTGTGGGAAACAAATGGTTCTGGTCTAACTGGATGTGTGCATGTAGAAGGATGCAA	104	0.26438213386887666	No Hit
CTGTGTGGGGGGACTAGAGAGATGGCTCAGTGGTTAAGAGCATTGACTGCTCTTCCAA	98	0.24912931845336453	No Hit
CTGTGTGGGGCTTTCCTTTCGCTGCTGCGGCCGCAGCCATGAGTATGCTCAGGCTACA	93	0.23641863894043774	No Hit
CTGTGTGGGAGTTTTTTATAAAAATATATATTTTTGTCCAAAAAAAAGGCATACATAT	89	0.22625009533009635	No Hit
CTGTGTGGGGGGGAATTCCTTCGGCAACATTAACTGGTTGATGCTGAAAAACATCGAA	86	0.2186236876223403	No Hit
CTGTGTGGGAACAGAGAACTGTAGATTTCAAGAGCTCACATTTAAAGACAGCTGTTCA	84	0.2135394158171696	No Hit
CTGTGTGGGGCCTTTCTCCTCGTTGGGCGTCTGAAGGCAAGATGGGTCACCAGCAGCT	81	0.20591300810941354	No Hit
CTGTGTGGGGCTCTCGGTCTTAGCGCCATCTTCCTTGAGACTCCTGCGCCATGAGAGC	80	0.20337087220682817	No Hit
CTGTGTGGGGGAGCAGCGCCTTGGAGGTCCCGTGGATCTGTGTCTTGCTTCAACAGTG	78	0.19828660040165746	No Hit
CTGTGTGGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTCTTCC	66	0.16778096957063326	No Hit
CTGTGTGGGATCACCAAGGGTGTGCAGTACCTGAATGAGATCAAGGACAGTGTGGTGG	65	0.1652388336680479	No Hit
CTGTGTGGGGTGTGGCCATCAAGATCCCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	63	0.1601545618628772	No Hit
CTGTGTGGGGCTCTCCGCCAGATCGCCGCCATCATGGACACGAGTCGCGTGCAGCCCA	60	0.15252815415512114	No Hit
CTGTGTGGGTAAGTTGGGAATCTTTACTCTCTCTTCTATACCTATTATCCATAGGTTT	59	0.1499860182525358	No Hit
CTGTGTGGGGCTCTTCCTGTCTGTATCAGGACGGCGCGTGGTCCACGCCGAGCGACTG	56	0.14235961054477972	No Hit
CTGTGTGGGGCCGGTTCTGGTGGCGCAGGCCGGTAGGATTTGCCTCCCGAGTGCTGAG	54	0.13727533873960904	No Hit
CTGTGTGGGGAGGCATTCAGGCAGCGAGAGCAGAGCAGCGTAGAGCAGCACAGCTGAG	54	0.13727533873960904	No Hit
CTGTGTGGGGAACATGTTTTTACAAGTAAACTCGCACTGGGCAAAGTCAATATAGACA	52	0.13219106693443833	No Hit
CTGTGTGGGGGAGCCGCCGTGGGTAGGGTTAGTGTGAGAGGTGCGGCGGGGGGGGTCT	52	0.13219106693443833	No Hit
CTGTGTGGGGAGTCGACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	51	0.12964893103185296	No Hit
CTGTGTGGGGCCTTTTCCTGTGGGAGCAGCCGGGTAGAGAGGAGCGTGGCCTTCTCCT	48	0.1220225233240969	No Hit
CTGTGTGGGGCCCTTTCCCCTGGCTGGCAGCGCGGAGGCCGCACGATGCCCGGAGTTA	48	0.1220225233240969	No Hit
CTGTGTGGGGCTCTTTTTCGTGACGCCTCCCAGGCGCTCGGCTGTGTCAAGATGAAGC	48	0.1220225233240969	No Hit
CTGTGTGGGGCTTCTTCCTCGGCGCTGCCTACGAGGTGGCTGCCATCTGTTTTACGGC	48	0.1220225233240969	No Hit
CTGTGTGGGCTTTTTCCTTTCGCTGCTGCGGCCGCAGCCATGAGTATGCTCAGGCTAC	48	0.1220225233240969	No Hit
CTGTGTGGGGCCTTTTGGCTCTCCGGTCGGCACCATGGCGGTCGGCAAGAACAAGCGC	48	0.1220225233240969	No Hit
CTGTGTGGGGTGAGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTCTTCC	46	0.1169382515189262	No Hit
CTGTGTGGGGCTCTTTCTCTTCAACGAGGCGGCCGAGCGGCAGACGCCAACATGCAGA	45	0.11439611561634086	No Hit
CTGTGTGGGGCTCTTTCGGCCTTGCTTGCCGGCAGACTCGCCGCCATGGGCCGTGTGA	45	0.11439611561634086	No Hit
CTGTGTGGGGCTCTTTCCGTTCCTAGCGCAGCCATGGCTCGTGGTCCCAAGAAACACC	43	0.10931184381117015	No Hit
CTGTGTGGGGCTCTTTCCAGCCAGCGCCGAGCGATGGGCATCTCTCGGGACAACTGGC	42	0.1067697079085848	No Hit
CTGTGTGGGGCTTTCTGAGCCCCGGCGGTGCGCGCTACGGAGCTCGGCCAGCCTGCTC	41	0.10422757200599943	No Hit
CTGTGTGGGGTTTCTCCGAGAACCGGGAAGGACGTTGGTGTAGAGGACATTGGCTACC	41	0.10422757200599943	No Hit

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GAAGCAG	55	0.0	52.35944	9
GGGGGAC	20	3.2925393E-4	52.35944	8
CCATCTC	20	3.2925393E-4	52.35944	10
TGGGACC	20	3.2925393E-4	52.35944	6
GGAGCCT	20	3.2925393E-4	52.35944	8
GGGCCAT	20	3.2925393E-4	52.35944	7
TGGGATT	70	0.0	52.359436	6
GAGGCAT	15	0.006975537	52.359432	10
GGGTCGG	15	0.006975537	52.359432	7
GTTTCCT	60	0.0	52.359432	9
GGGATTG	15	0.006975537	52.359432	7
GAGAGTG	60	0.0	52.359432	9
TGGGATA	45	8.185452E-11	52.359432	6
GGGGACC	30	7.433955E-7	52.359432	7
GGTCGGG	15	0.006975537	52.359432	8
TAAGGAG	20	3.3770647E-4	52.091957	39
GGGTCAC	15	0.007118525	52.091953	44
CTTTAAC	15	0.007118525	52.091953	44
CCGTTGT	35	3.7036443E-8	52.091953	38
TGCCTCT	15	0.007118525	52.091953	44

Summary

Basic Statistics

Per base sequence quality

Per tile sequence quality

Per sequence quality scores

Per base sequence content

Per sequence GC content

Per base N content

Sequence Length Distribution

Sequence Duplication Levels

Overrepresented sequences

Adapter Content

Kmer Content