SRR212500_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR212500_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	16750
Sequences flagged as poor quality	0
Sequence length	58
%GC	52

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

Sequence	Count	Percentage	Possible Source
CATCCCGGGGGGGAATTCCTGGCACTGGCTGGTTTCGCTACCGTAGCGCAGGCCGCTC	277	1.653731343283582	No Hit
CATCCCGGGGAGGTAGTGACGAAAAATAACAATACAGGACTCTTTCGAGGCCCTGTAA	170	1.0149253731343284	No Hit
CATCCCGGGGGGGAATTCCTGGCACTGGCTGGGTTCGCTACCGTAGCGCAGGCCGCTC	132	0.7880597014925373	No Hit
CATCCCGGGGGGAATTCCTTCGATTCTGTTTTGCTACCCGTTGTAGCGCCGGAAGATG	103	0.6149253731343283	No Hit
CATCCCGGGGGGGAATTCCTTCGATTCTGTTTTGCTACCCGTTGTAGCGCCGGAAGAT	92	0.5492537313432836	No Hit
CATCCCGGGAGTTTCAGCATGGCCCTTTCTTTATGAGCTGGATTTAATAGACTCAAAA	56	0.33432835820895523	No Hit
CATCCCGGGAGGTAGTGACGAAAAATAACAATACAGGACTCTTTCGAGGCCCTGTAAT	55	0.3283582089552239	No Hit
CATCCCGGGGGGGAATTCCTGGCACTGGCTGGTTTCGCTACCGTAGCGCAGGCCGCCC	42	0.2507462686567164	No Hit
CATCCCGGGGGGAATTCCTTCGGCAACATTAACTGGTTGACGCTGAAAAACATCGAAC	38	0.22686567164179106	No Hit
CATCCCGGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	32	0.191044776119403	No Hit
CATCCCGGGGGAATTCCTTCGATTCTGTTTTGCTACCCGTTGTAGCGCCGGAAGATGC	32	0.191044776119403	No Hit
CATCCCGGGGGGGAATTCCTGGCACTGGCTGGGTTCGCTACCGTAGCGCAGGCCGCCC	31	0.18507462686567164	No Hit
CATCCCGGGGAAGGTGACAGCATTGCTTCTGTGTAAATTATGTACTGCAAAAATTTTT	31	0.18507462686567164	No Hit
CATCCCGGGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	30	0.1791044776119403	No Hit
CATCCCGGGGGGAATTCCTTCGGCAACATTAACTGGTTGATGCTGAAAAACATCGAAC	25	0.1492537313432836	No Hit
CATCCCGGGGGGGGAATTCCTTCGATTCTGTTTTGCTACCCGTTGTAGCGCCGGAAGA	24	0.14328358208955225	No Hit
CATCCCGGGATGGCCTACCCATTCCAACTTGGTCTACAAGACGCCACATCCCCTATTA	24	0.14328358208955225	No Hit
CATCCCGGGAGAGCAGCGCCTTGGAGGTCCCGTGGATCTGTGTCTTGCTTCAACAGTG	20	0.11940298507462686	No Hit
CATCCCGGGAAGCAGTGGTATCAACGCAGAGTCGACTTTTTTTTTTTTTTTTTTTTTT	18	0.10746268656716418	No Hit
CATCCCGGGGGGGAATTCCTTCGGCAACATTAACTGGTTGATGCTGAAAAACATCGAA	17	0.10149253731343284	No Hit
CATCCCGGGGCTCTCGGTCTTAGCGCCATCTTCCTTGAGACTCCTGCGCCATGAGAGC	17	0.10149253731343284	No Hit
CATCCCGGGGGGGAATTCCTGGCACTGGCTGGGTTCGCTACCGGAGCGCAGGCCGCTC	17	0.10149253731343284	No Hit
CATCCCGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	17	0.10149253731343284	No Hit

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GGATGGC	20	3.2879526E-4	52.195786	8
GGATGCA	20	3.2879526E-4	52.195786	8
CGGGGTG	20	3.2879526E-4	52.195786	6
CGGGGGA	45	7.8216544E-11	52.195786	6
CGGGGCT	40	1.6516424E-9	52.195786	6
CCCGGGT	45	7.8216544E-11	52.195786	4
CGGGGAT	20	3.2879526E-4	52.195786	6
CGGGGAA	40	1.6516424E-9	52.195786	6
GGATCTC	20	3.2879526E-4	52.195786	8
GGATCCC	20	3.2879526E-4	52.195786	8
GGGAGTG	25	1.5501517E-5	52.195786	7
GGGAGAT	20	3.2879526E-4	52.195786	7
CGGGATG	90	0.0	52.195786	6
CGGGATA	25	1.5501517E-5	52.195786	6
CGGGAGT	50	3.6379788E-12	52.195786	6
CGGGAGG	90	0.0	52.195786	6
CGGGACT	25	1.5501517E-5	52.195786	6
CGGGAAC	40	1.6516424E-9	52.195786	6
CCGGGCT	20	3.2879526E-4	52.195786	5
CCGGGAT	360	0.0	52.195786	5

Summary

Basic Statistics

Per base sequence quality

Per tile sequence quality

Per sequence quality scores

Per base sequence content

Per sequence GC content

Per base N content

Sequence Length Distribution

Sequence Duplication Levels

Overrepresented sequences

Adapter Content

Kmer Content