Basic Statistics
Measure | Value |
---|---|
Filename | SRR10540284_2.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 165875752 |
Sequences flagged as poor quality | 0 |
Sequence length | 150 |
%GC | 45 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATAC | 5557264 | 3.35025700441135 | No Hit |
AGATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATA | 2697873 | 1.626442061284521 | No Hit |
CCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATA | 2360789 | 1.4232273081119173 | No Hit |
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT | 1272111 | 0.7669059429493951 | No Hit |
CATGTACTCTGCGTTGATACCACTGCTTAGATCGGAAGAGCGTCGTGTAG | 389262 | 0.23467082759630833 | Illumina Single End PCR Primer 1 (100% over 22bp) |
CCATCCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCG | 385718 | 0.2325342886765029 | No Hit |
CATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATACC | 297662 | 0.1794487719941128 | No Hit |
ATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACC | 194223 | 0.11708944656359417 | No Hit |
AGATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATAC | 179585 | 0.10826476916288524 | No Hit |
CCATGTACTCTGCGTTGATACCACTGCTTAGATCGGAAGAGCGTCGTGTA | 166663 | 0.10047460101341393 | Illumina Single End PCR Primer 1 (100% over 21bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
AGGCTAA | 214985 | 0.0 | 133.29956 | 1 |
GGCTAAC | 217895 | 0.0 | 132.0093 | 2 |
AGTTAGC | 120270 | 0.0 | 130.05812 | 2 |
CTATGCA | 305600 | 0.0 | 129.57954 | 2 |
CAAGCTA | 130610 | 0.0 | 126.97233 | 2 |
CTCAATG | 171075 | 0.0 | 126.94694 | 1 |
GATAGAC | 203390 | 0.0 | 126.59004 | 1 |
CATCAAG | 118750 | 0.0 | 126.32253 | 1 |
AGATGTA | 637615 | 0.0 | 126.316696 | 1 |
CGAACTT | 90455 | 0.0 | 125.532616 | 1 |
ATAGACA | 209185 | 0.0 | 125.48659 | 2 |
ACGCTTA | 155175 | 0.0 | 125.37143 | 2 |
GATGTAC | 647860 | 0.0 | 125.18887 | 2 |
ATCAAGT | 122810 | 0.0 | 123.30532 | 2 |
TCAATGA | 176480 | 0.0 | 123.00207 | 2 |
CAGATTC | 149710 | 0.0 | 122.97927 | 2 |
GCTAACT | 91995 | 0.0 | 122.209656 | 3 |
ACAAGCT | 136755 | 0.0 | 121.66416 | 1 |
CATTGGC | 134460 | 0.0 | 120.60043 | 2 |
GGCTTCA | 158425 | 0.0 | 120.39533 | 2 |