FastQCFastQC Report
Tue 21 Mar 2023
SRR10540283_2.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR10540283_2.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences212595935
Sequences flagged as poor quality0
Sequence length150
%GC41

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATAC63592542.991239696092966No Hit
CCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATA33557791.5784775000519176No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT19394990.9122935487924545No Hit
CCATCCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCG5523190.25979753563961605No Hit
CATGTACTCTGCGTTGATACCACTGCTTAGATCGGAAGAGCGTCGTGTAG5277690.24824980778677636Illumina Single End PCR Primer 1 (100% over 22bp)
CCATGTACTCTGCGTTGATACCACTGCTTAGATCGGAAGAGCGTCGTGTA2876390.13529844773372549Illumina Single End PCR Primer 1 (100% over 21bp)
CATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATACC2739410.1288552389301329No Hit
ATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACC2653370.12480812485901954No Hit

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGCTAAC2912900.0135.032612
AGTTAGC2561400.0134.576452
AGGCTAA2950650.0133.609821
GATAGAC2882550.0131.775221
AACGTGA2652950.0130.928221
ACGTGAT2691450.0129.328482
CTCAATG2569350.0129.016191
ACGCTTA1896000.0128.956442
ATAGACA3035200.0128.822982
ATAGCGA1902200.0128.782651
CAAGCTA1500350.0128.336432
CAATGGA4256950.0127.526471
TCACGCA2872250.0127.36472
CGAACTT1293050.0126.959171
ATGAATC1550200.0126.79672
ATGCCTA1379200.0125.84721
TAGCGAC1950200.0125.324492
GAGTCAA1549850.0125.2968142
AGCTGAA1962150.0125.1410452
TCAATGA2622100.0125.01052