Basic Statistics
Measure | Value |
---|---|
Filename | SRR10540283_2.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 212595935 |
Sequences flagged as poor quality | 0 |
Sequence length | 150 |
%GC | 41 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATAC | 6359254 | 2.991239696092966 | No Hit |
CCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATA | 3355779 | 1.5784775000519176 | No Hit |
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT | 1939499 | 0.9122935487924545 | No Hit |
CCATCCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCG | 552319 | 0.25979753563961605 | No Hit |
CATGTACTCTGCGTTGATACCACTGCTTAGATCGGAAGAGCGTCGTGTAG | 527769 | 0.24824980778677636 | Illumina Single End PCR Primer 1 (100% over 22bp) |
CCATGTACTCTGCGTTGATACCACTGCTTAGATCGGAAGAGCGTCGTGTA | 287639 | 0.13529844773372549 | Illumina Single End PCR Primer 1 (100% over 21bp) |
CATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATACC | 273941 | 0.1288552389301329 | No Hit |
ATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACC | 265337 | 0.12480812485901954 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGCTAAC | 291290 | 0.0 | 135.03261 | 2 |
AGTTAGC | 256140 | 0.0 | 134.57645 | 2 |
AGGCTAA | 295065 | 0.0 | 133.60982 | 1 |
GATAGAC | 288255 | 0.0 | 131.77522 | 1 |
AACGTGA | 265295 | 0.0 | 130.92822 | 1 |
ACGTGAT | 269145 | 0.0 | 129.32848 | 2 |
CTCAATG | 256935 | 0.0 | 129.01619 | 1 |
ACGCTTA | 189600 | 0.0 | 128.95644 | 2 |
ATAGACA | 303520 | 0.0 | 128.82298 | 2 |
ATAGCGA | 190220 | 0.0 | 128.78265 | 1 |
CAAGCTA | 150035 | 0.0 | 128.33643 | 2 |
CAATGGA | 425695 | 0.0 | 127.52647 | 1 |
TCACGCA | 287225 | 0.0 | 127.3647 | 2 |
CGAACTT | 129305 | 0.0 | 126.95917 | 1 |
ATGAATC | 155020 | 0.0 | 126.7967 | 2 |
ATGCCTA | 137920 | 0.0 | 125.8472 | 1 |
TAGCGAC | 195020 | 0.0 | 125.32449 | 2 |
GAGTCAA | 154985 | 0.0 | 125.296814 | 2 |
AGCTGAA | 196215 | 0.0 | 125.141045 | 2 |
TCAATGA | 262210 | 0.0 | 125.0105 | 2 |