Basic Statistics
Measure | Value |
---|---|
Filename | SRR10540274_2.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 116000742 |
Sequences flagged as poor quality | 0 |
Sequence length | 150 |
%GC | 51 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATAC | 5748689 | 4.9557346796971355 | No Hit |
CCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATA | 1538145 | 1.3259785872748986 | No Hit |
AGATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATA | 1286934 | 1.1094187656144476 | No Hit |
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT | 1018660 | 0.8781495552847413 | No Hit |
CATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATACC | 303255 | 0.26142505191906446 | No Hit |
CATGTACTCTGCGTTGATACCACTGCTTAGATCGGAAGAGCGTCGTGTAG | 246848 | 0.21279863882249997 | Illumina Single End PCR Primer 1 (100% over 22bp) |
CCATCCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCG | 235748 | 0.2032297345132499 | No Hit |
CATGTACTCTGCGTTGATACCCATGTACTCTGCGTTGATACCACTGCTTC | 145426 | 0.12536643946639583 | No Hit |
ATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACC | 138440 | 0.1193440641957273 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GATGTAC | 313280 | 0.0 | 137.49774 | 2 |
CTGTAGC | 326590 | 0.0 | 135.09499 | 1 |
CTCAATG | 165070 | 0.0 | 134.4274 | 1 |
GATAGAC | 122085 | 0.0 | 133.65446 | 1 |
AGTTAGC | 76410 | 0.0 | 133.22253 | 2 |
CGAACTT | 78155 | 0.0 | 133.13138 | 1 |
GAGTCAA | 92145 | 0.0 | 132.93639 | 2 |
CAATGGA | 268605 | 0.0 | 132.92503 | 1 |
AGAGTCA | 93460 | 0.0 | 132.58351 | 1 |
CTATGCA | 116950 | 0.0 | 132.4495 | 2 |
ACGCTTA | 84005 | 0.0 | 132.21648 | 2 |
AGATGTA | 325845 | 0.0 | 132.18681 | 1 |
TGTAGCC | 334520 | 0.0 | 131.80424 | 2 |
TCAATGA | 167335 | 0.0 | 131.46767 | 2 |
GGCTAAC | 89095 | 0.0 | 131.03871 | 2 |
GTAGCCT | 109240 | 0.0 | 130.20477 | 3 |
ATAGACA | 129855 | 0.0 | 130.20348 | 2 |
AGGCTAA | 90255 | 0.0 | 130.03258 | 1 |
TAAGGTC | 68640 | 0.0 | 129.88464 | 2 |
GTAGCCG | 123935 | 0.0 | 129.77151 | 3 |