FastQCFastQC Report
Tue 21 Mar 2023
SRR10540274_2.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR10540274_2.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences116000742
Sequences flagged as poor quality0
Sequence length150
%GC51

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATAC57486894.9557346796971355No Hit
CCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATA15381451.3259785872748986No Hit
AGATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATA12869341.1094187656144476No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT10186600.8781495552847413No Hit
CATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATACC3032550.26142505191906446No Hit
CATGTACTCTGCGTTGATACCACTGCTTAGATCGGAAGAGCGTCGTGTAG2468480.21279863882249997Illumina Single End PCR Primer 1 (100% over 22bp)
CCATCCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCG2357480.2032297345132499No Hit
CATGTACTCTGCGTTGATACCCATGTACTCTGCGTTGATACCACTGCTTC1454260.12536643946639583No Hit
ATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACC1384400.1193440641957273No Hit

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GATGTAC3132800.0137.497742
CTGTAGC3265900.0135.094991
CTCAATG1650700.0134.42741
GATAGAC1220850.0133.654461
AGTTAGC764100.0133.222532
CGAACTT781550.0133.131381
GAGTCAA921450.0132.936392
CAATGGA2686050.0132.925031
AGAGTCA934600.0132.583511
CTATGCA1169500.0132.44952
ACGCTTA840050.0132.216482
AGATGTA3258450.0132.186811
TGTAGCC3345200.0131.804242
TCAATGA1673350.0131.467672
GGCTAAC890950.0131.038712
GTAGCCT1092400.0130.204773
ATAGACA1298550.0130.203482
AGGCTAA902550.0130.032581
TAAGGTC686400.0129.884642
GTAGCCG1239350.0129.771513