FastQCFastQC Report
Tue 21 Mar 2023
SRR10540273_2.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR10540273_2.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences174980943
Sequences flagged as poor quality0
Sequence length150
%GC45

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATAC48891512.79410484146265No Hit
CCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATA30543421.7455283687664205No Hit
AGATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATA13349430.7629076498919085No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT13080660.7475476915220419No Hit
CCATCCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCG5836490.33355003693173607No Hit
CATGTACTCTGCGTTGATACCACTGCTTAGATCGGAAGAGCGTCGTGTAG3544220.20254891414089587Illumina Single End PCR Primer 1 (100% over 22bp)
CATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATACC2511090.14350648458901036No Hit
CCATGTACTCTGCGTTGATACCACTGCTTAGATCGGAAGAGCGTCGTGTA2202760.12588570859399245Illumina Single End PCR Primer 1 (100% over 21bp)
ATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACC1855400.10603440398649583No Hit

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATGAATC2732800.0136.25972
CAATGGA4728650.0130.708541
AGTTAGC1166350.0129.08992
AGGCTAA1704100.0129.028691
GGCTAAC1701700.0128.389162
CTATGCA2584350.0128.330642
ATGCCTA1300700.0126.856291
CAAGCTA1311650.0126.4938352
TAAGGTC1211500.0126.16312
CGAACTT1017300.0126.073751
ACGCTTA1437250.0125.9004752
CTCAATG1781450.0125.544851
GATAGAC1846250.0125.484351
TGCCTAA1298250.0124.588112
TGAATCA1031300.0123.475443
GAGTCAA1310600.0122.831722
ATAGACA1937600.0122.613422
CATCAAG1109600.0122.415151
TCAATGA1832550.0121.936882
CGAGTAA1407450.0121.250222