Basic Statistics
Measure | Value |
---|---|
Filename | SRR10540273_2.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 174980943 |
Sequences flagged as poor quality | 0 |
Sequence length | 150 |
%GC | 45 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATAC | 4889151 | 2.79410484146265 | No Hit |
CCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATA | 3054342 | 1.7455283687664205 | No Hit |
AGATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATA | 1334943 | 0.7629076498919085 | No Hit |
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT | 1308066 | 0.7475476915220419 | No Hit |
CCATCCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCG | 583649 | 0.33355003693173607 | No Hit |
CATGTACTCTGCGTTGATACCACTGCTTAGATCGGAAGAGCGTCGTGTAG | 354422 | 0.20254891414089587 | Illumina Single End PCR Primer 1 (100% over 22bp) |
CATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATACC | 251109 | 0.14350648458901036 | No Hit |
CCATGTACTCTGCGTTGATACCACTGCTTAGATCGGAAGAGCGTCGTGTA | 220276 | 0.12588570859399245 | Illumina Single End PCR Primer 1 (100% over 21bp) |
ATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACC | 185540 | 0.10603440398649583 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
ATGAATC | 273280 | 0.0 | 136.2597 | 2 |
CAATGGA | 472865 | 0.0 | 130.70854 | 1 |
AGTTAGC | 116635 | 0.0 | 129.0899 | 2 |
AGGCTAA | 170410 | 0.0 | 129.02869 | 1 |
GGCTAAC | 170170 | 0.0 | 128.38916 | 2 |
CTATGCA | 258435 | 0.0 | 128.33064 | 2 |
ATGCCTA | 130070 | 0.0 | 126.85629 | 1 |
CAAGCTA | 131165 | 0.0 | 126.493835 | 2 |
TAAGGTC | 121150 | 0.0 | 126.1631 | 2 |
CGAACTT | 101730 | 0.0 | 126.07375 | 1 |
ACGCTTA | 143725 | 0.0 | 125.900475 | 2 |
CTCAATG | 178145 | 0.0 | 125.54485 | 1 |
GATAGAC | 184625 | 0.0 | 125.48435 | 1 |
TGCCTAA | 129825 | 0.0 | 124.58811 | 2 |
TGAATCA | 103130 | 0.0 | 123.47544 | 3 |
GAGTCAA | 131060 | 0.0 | 122.83172 | 2 |
ATAGACA | 193760 | 0.0 | 122.61342 | 2 |
CATCAAG | 110960 | 0.0 | 122.41515 | 1 |
TCAATGA | 183255 | 0.0 | 121.93688 | 2 |
CGAGTAA | 140745 | 0.0 | 121.25022 | 2 |