Basic Statistics
Measure | Value |
---|---|
Filename | SRR10540270_2.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 154622784 |
Sequences flagged as poor quality | 0 |
Sequence length | 150 |
%GC | 46 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATAC | 6580435 | 4.255799067749291 | No Hit |
CCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATA | 3182961 | 2.0585329779083525 | No Hit |
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT | 2565925 | 1.659474065607304 | No Hit |
AGATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATA | 2416787 | 1.5630212685861355 | No Hit |
CCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGA | 664847 | 0.4299799698341999 | No Hit |
CCATCCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCG | 519369 | 0.33589422371285205 | No Hit |
CATGTACTCTGCGTTGATACCACTGCTTAGATCGGAAGAGCGTCGTGTAG | 332122 | 0.21479499424871307 | Illumina Single End PCR Primer 1 (100% over 22bp) |
CATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATACC | 281837 | 0.182273913784918 | No Hit |
ATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACC | 194553 | 0.1258242769707212 | No Hit |
CCATGTACTCTGCGTTGATACCACTGCTTAGATCGGAAGAGCGTCGTGTA | 159470 | 0.10313486529902346 | Illumina Single End PCR Primer 1 (100% over 21bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
AGATGTA | 469490 | 0.0 | 134.2704 | 1 |
ATAGCGA | 105830 | 0.0 | 133.27821 | 1 |
GATGTAC | 475650 | 0.0 | 133.2441 | 2 |
ATGAATC | 114240 | 0.0 | 131.69424 | 2 |
AGCTGAA | 158305 | 0.0 | 131.38278 | 2 |
ACGCTTA | 116740 | 0.0 | 131.20042 | 2 |
GGCTAAC | 121205 | 0.0 | 130.7536 | 2 |
CGAACTT | 108730 | 0.0 | 130.34705 | 1 |
AGTTAGC | 92765 | 0.0 | 130.27156 | 2 |
AAGGACA | 277515 | 0.0 | 129.91101 | 1 |
AGGCTAA | 122860 | 0.0 | 129.20525 | 1 |
CTCAATG | 127780 | 0.0 | 129.10184 | 1 |
CCGAAGT | 116020 | 0.0 | 129.10115 | 1 |
CAAGCTA | 89325 | 0.0 | 128.44138 | 2 |
CAATGGA | 218425 | 0.0 | 127.51575 | 1 |
TAGCGAC | 110575 | 0.0 | 127.478966 | 2 |
GAACTTA | 110350 | 0.0 | 127.37985 | 2 |
AGGTACA | 112830 | 0.0 | 127.24249 | 2 |
GATAGAC | 88290 | 0.0 | 127.052986 | 1 |
ATGCCTA | 84825 | 0.0 | 126.9284 | 1 |