FastQCFastQC Report
Tue 21 Mar 2023
SRR10540270_2.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR10540270_2.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences154622784
Sequences flagged as poor quality0
Sequence length150
%GC46

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATAC65804354.255799067749291No Hit
CCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATA31829612.0585329779083525No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT25659251.659474065607304No Hit
AGATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATA24167871.5630212685861355No Hit
CCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGA6648470.4299799698341999No Hit
CCATCCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCG5193690.33589422371285205No Hit
CATGTACTCTGCGTTGATACCACTGCTTAGATCGGAAGAGCGTCGTGTAG3321220.21479499424871307Illumina Single End PCR Primer 1 (100% over 22bp)
CATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATACC2818370.182273913784918No Hit
ATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACC1945530.1258242769707212No Hit
CCATGTACTCTGCGTTGATACCACTGCTTAGATCGGAAGAGCGTCGTGTA1594700.10313486529902346Illumina Single End PCR Primer 1 (100% over 21bp)

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGATGTA4694900.0134.27041
ATAGCGA1058300.0133.278211
GATGTAC4756500.0133.24412
ATGAATC1142400.0131.694242
AGCTGAA1583050.0131.382782
ACGCTTA1167400.0131.200422
GGCTAAC1212050.0130.75362
CGAACTT1087300.0130.347051
AGTTAGC927650.0130.271562
AAGGACA2775150.0129.911011
AGGCTAA1228600.0129.205251
CTCAATG1277800.0129.101841
CCGAAGT1160200.0129.101151
CAAGCTA893250.0128.441382
CAATGGA2184250.0127.515751
TAGCGAC1105750.0127.4789662
GAACTTA1103500.0127.379852
AGGTACA1128300.0127.242492
GATAGAC882900.0127.0529861
ATGCCTA848250.0126.92841