Basic Statistics
Measure | Value |
---|---|
Filename | SRR10540267_2.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 161058214 |
Sequences flagged as poor quality | 0 |
Sequence length | 150 |
%GC | 48 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATAC | 9148190 | 5.680051810334865 | No Hit |
CCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATA | 1954985 | 1.2138375010168683 | No Hit |
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT | 1946458 | 1.2085431420467634 | No Hit |
AGATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATA | 1644997 | 1.0213679632632708 | No Hit |
CATGTACTCTGCGTTGATACCACTGCTTAGATCGGAAGAGCGTCGTGTAG | 534389 | 0.33179866256309043 | Illumina Single End PCR Primer 1 (100% over 22bp) |
CATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATACC | 454814 | 0.2823910614083924 | No Hit |
CCATCCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCG | 253587 | 0.15745052282772737 | No Hit |
CATGTACTCTGCGTTGATACCCATGTACTCTGCGTTGATACCACTGCTTC | 223153 | 0.13855424970750016 | No Hit |
ATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACC | 215960 | 0.13408816268135196 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
AGTTAGC | 139665 | 0.0 | 136.45488 | 2 |
ATAGCGA | 104900 | 0.0 | 134.68092 | 1 |
GATAGAC | 146930 | 0.0 | 134.26076 | 1 |
GGCTAAC | 135735 | 0.0 | 133.90114 | 2 |
CTCAATG | 166010 | 0.0 | 133.22997 | 1 |
AGGCTAA | 136600 | 0.0 | 133.15294 | 1 |
ATAGACA | 152690 | 0.0 | 132.63931 | 2 |
AAGGACA | 296135 | 0.0 | 132.56755 | 1 |
GATGTAC | 330505 | 0.0 | 132.49634 | 2 |
ACGCTTA | 123580 | 0.0 | 132.3397 | 2 |
AGATGTA | 331630 | 0.0 | 131.43787 | 1 |
CAAGCTA | 101620 | 0.0 | 131.13876 | 2 |
ACTAGTA | 190175 | 0.0 | 130.60155 | 2 |
AGCTGAA | 142000 | 0.0 | 130.53426 | 2 |
ATGAATC | 86665 | 0.0 | 129.82007 | 2 |
TCAATGA | 167945 | 0.0 | 129.70322 | 2 |
CAATGGA | 244320 | 0.0 | 129.65639 | 1 |
ATGCCTA | 87860 | 0.0 | 129.54988 | 1 |
CGAACTT | 86110 | 0.0 | 128.98648 | 1 |
TAGCGAC | 109530 | 0.0 | 128.72964 | 2 |