FastQCFastQC Report
Tue 21 Mar 2023
SRR10540267_2.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR10540267_2.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences161058214
Sequences flagged as poor quality0
Sequence length150
%GC48

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATAC91481905.680051810334865No Hit
CCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATA19549851.2138375010168683No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT19464581.2085431420467634No Hit
AGATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATA16449971.0213679632632708No Hit
CATGTACTCTGCGTTGATACCACTGCTTAGATCGGAAGAGCGTCGTGTAG5343890.33179866256309043Illumina Single End PCR Primer 1 (100% over 22bp)
CATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATACC4548140.2823910614083924No Hit
CCATCCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCG2535870.15745052282772737No Hit
CATGTACTCTGCGTTGATACCCATGTACTCTGCGTTGATACCACTGCTTC2231530.13855424970750016No Hit
ATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACC2159600.13408816268135196No Hit

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGTTAGC1396650.0136.454882
ATAGCGA1049000.0134.680921
GATAGAC1469300.0134.260761
GGCTAAC1357350.0133.901142
CTCAATG1660100.0133.229971
AGGCTAA1366000.0133.152941
ATAGACA1526900.0132.639312
AAGGACA2961350.0132.567551
GATGTAC3305050.0132.496342
ACGCTTA1235800.0132.33972
AGATGTA3316300.0131.437871
CAAGCTA1016200.0131.138762
ACTAGTA1901750.0130.601552
AGCTGAA1420000.0130.534262
ATGAATC866650.0129.820072
TCAATGA1679450.0129.703222
CAATGGA2443200.0129.656391
ATGCCTA878600.0129.549881
CGAACTT861100.0128.986481
TAGCGAC1095300.0128.729642