FastQCFastQC Report
Tue 21 Mar 2023
SRR10540266_2.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR10540266_2.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences156008393
Sequences flagged as poor quality0
Sequence length150
%GC48

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATA84624685.424367136452717No Hit
CATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATAC33921062.1743099424144443No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT17026061.091355386245149No Hit
CCATCCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCG16881731.08210396090677No Hit
AGATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATA10505280.6733791559534877No Hit
CCATGTACTCTGCGTTGATACCACTGCTTAGATCGGAAGAGCGTCGTGTA4459010.2858185969520242Illumina Single End PCR Primer 1 (100% over 21bp)
CCATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATAC4352650.2790010150287235No Hit
CCATCCTCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCG2973580.19060384783272524No Hit
CATGTACTCTGCGTTGATACCACTGCTTAGATCGGAAGAGCGTCGTGTAG1950220.12500737700695372Illumina Single End PCR Primer 1 (100% over 22bp)
CATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATACC1846980.11838978432397544No Hit
CCATGTACTCTGCGTTGATACCCATGTACTCTGCGTTGATACCACTGCTT1838010.11781481525804834No Hit

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ACGCTTA2600900.0138.08842
GATAGAC1873550.0136.259741
AACGCTT2669650.0134.685521
ATAGACA1944850.0134.416082
AGGCTAA1157850.0134.063131
ATAGCGA1022950.0133.94431
GGCTAAC1171150.0132.555482
CAAGCTA1057750.0132.486922
AGTTAGC926550.0131.633832
GAGTCAA1011950.0131.087812
AGAGTCA1019000.0130.827851
CTCAATG1488950.0130.2271
ATGCCTA895750.0129.444871
AACGTGA998500.0128.922851
ATGAATC809400.0128.589972
GGCTTCA1667400.0128.340972
ACAAGCT1095050.0128.100281
TAGCGAC1075950.0127.233392
CAATGGA2141100.0126.88121
CGCTTAA931450.0126.833673