Basic Statistics
Measure | Value |
---|---|
Filename | SRR10540266_2.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 156008393 |
Sequences flagged as poor quality | 0 |
Sequence length | 150 |
%GC | 48 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATA | 8462468 | 5.424367136452717 | No Hit |
CATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATAC | 3392106 | 2.1743099424144443 | No Hit |
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT | 1702606 | 1.091355386245149 | No Hit |
CCATCCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCG | 1688173 | 1.08210396090677 | No Hit |
AGATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATA | 1050528 | 0.6733791559534877 | No Hit |
CCATGTACTCTGCGTTGATACCACTGCTTAGATCGGAAGAGCGTCGTGTA | 445901 | 0.2858185969520242 | Illumina Single End PCR Primer 1 (100% over 21bp) |
CCATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATAC | 435265 | 0.2790010150287235 | No Hit |
CCATCCTCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCG | 297358 | 0.19060384783272524 | No Hit |
CATGTACTCTGCGTTGATACCACTGCTTAGATCGGAAGAGCGTCGTGTAG | 195022 | 0.12500737700695372 | Illumina Single End PCR Primer 1 (100% over 22bp) |
CATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATACC | 184698 | 0.11838978432397544 | No Hit |
CCATGTACTCTGCGTTGATACCCATGTACTCTGCGTTGATACCACTGCTT | 183801 | 0.11781481525804834 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
ACGCTTA | 260090 | 0.0 | 138.0884 | 2 |
GATAGAC | 187355 | 0.0 | 136.25974 | 1 |
AACGCTT | 266965 | 0.0 | 134.68552 | 1 |
ATAGACA | 194485 | 0.0 | 134.41608 | 2 |
AGGCTAA | 115785 | 0.0 | 134.06313 | 1 |
ATAGCGA | 102295 | 0.0 | 133.9443 | 1 |
GGCTAAC | 117115 | 0.0 | 132.55548 | 2 |
CAAGCTA | 105775 | 0.0 | 132.48692 | 2 |
AGTTAGC | 92655 | 0.0 | 131.63383 | 2 |
GAGTCAA | 101195 | 0.0 | 131.08781 | 2 |
AGAGTCA | 101900 | 0.0 | 130.82785 | 1 |
CTCAATG | 148895 | 0.0 | 130.227 | 1 |
ATGCCTA | 89575 | 0.0 | 129.44487 | 1 |
AACGTGA | 99850 | 0.0 | 128.92285 | 1 |
ATGAATC | 80940 | 0.0 | 128.58997 | 2 |
GGCTTCA | 166740 | 0.0 | 128.34097 | 2 |
ACAAGCT | 109505 | 0.0 | 128.10028 | 1 |
TAGCGAC | 107595 | 0.0 | 127.23339 | 2 |
CAATGGA | 214110 | 0.0 | 126.8812 | 1 |
CGCTTAA | 93145 | 0.0 | 126.83367 | 3 |