FastQCFastQC Report
Tue 21 Mar 2023
SRR10540262_2.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR10540262_2.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences148136917
Sequences flagged as poor quality0
Sequence length150
%GC44

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATA107399337.250004399646039No Hit
CATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATAC89111446.0154782349088585No Hit
CCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATA20746801.4005151734054246No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT8999210.607492729175672No Hit
CATGTACTCTGCGTTGATACCACTGCTTAGATCGGAAGAGCGTCGTGTAG8482500.5726121598709929Illumina Single End PCR Primer 1 (100% over 22bp)
ATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACC8048190.5432940122548926No Hit
AGATGTACTCTGCGTTGATACCACTGCTTAGATCGGAAGAGCGTCGTGTA7925080.5349834572296385Illumina Single End PCR Primer 1 (100% over 21bp)
AGATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATAC6505660.4391653432344619No Hit
CATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATACC6056230.40882651824055444No Hit
CCATCCTCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCG5872570.396428528345841No Hit
AGATGTACTCTGCGTTGATACCACTGCTTCCTATGTACTCTGCGTTGATA5766050.3892378832212365No Hit
CATGTACTCTGCGTTGATACCACTGCTTCCTATGTACTCTGCGTTGATAC4345490.29334281339201895No Hit
AGATGTACTCTGCGTTGATACCACTGCTTCTCATGTACTCTGCGTTGATA4002970.27022096051857214No Hit
CCATCCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCG3619650.24434489884786786No Hit
CATGTACTCTGCGTTGATACCACTGCTTCTCATGTACTCTGCGTTGATAC3205870.2164126312956817No Hit
AGATGTACTCTGCGTTGATACCACTGCTTTCCATGTACTCTGCGTTGATA3090320.20861241495933117No Hit
ATCATTCCTATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGC2644520.1785186335422385No Hit
CCTAATCCTATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGC2637610.1780521731797618No Hit
CATGTACTCTGCGTTGATACCACTGCTTTCCATGTACTCTGCGTTGATAC2138580.14436509435389425No Hit
CTGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACC2124860.14343892414069884No Hit
CCATGTACTCTGCGTTGATACCACTGCTTAGATCGGAAGAGCGTCGTGTA2092870.14127943542931976Illumina Single End PCR Primer 1 (100% over 21bp)
TATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATAC1947220.13144731505381604No Hit
CTCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT1799600.12148220959668009No Hit
ACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACCACTG1780800.12021311338617907No Hit
GTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACCAC1705880.11515562997709747No Hit
AGATGTACTCTGCGTTGATACCACTGCTTACCCATGTACTCTGCGTTGAT1678720.11332219098362901No Hit

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGATGTA21219850.0141.453341
GATGTAC21690300.0138.376622
CTCAATG1558250.0132.488251
CAAGCTA913350.0130.468572
GGCTAAC854350.0129.971482
AGGCTAA867050.0128.574251
TCAATGA1602550.0127.954032
CGAACTT683200.0127.5683441
AGTTAGC694750.0126.9738542
CAATGGA2640250.0126.558011
ACAAGCT956200.0125.0466161
CCTAATC1192800.0124.832681
ACGCTTA932250.0123.150532
GAGTCAA703500.0121.6586462
CTAATCC1219900.0121.647742
GAACTTA718550.0121.365262
ATCCTCA1460750.0121.347433
AGAGTCA714600.0120.40641
CTAACGA844900.0120.0732352
ATGCCTA563700.0120.030151