FastQCFastQC Report
Tue 21 Mar 2023
SRR10540259_2.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR10540259_2.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences162726203
Sequences flagged as poor quality0
Sequence length150
%GC41

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATA104337616.411850585612202No Hit
CATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATAC52064723.19952896584209No Hit
CCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATA28046591.7235447938277033No Hit
ATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACC7909460.4860593963468809No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT7500210.46090978967904755No Hit
AGATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATAC6019840.36993673354499645No Hit
AGATGTACTCTGCGTTGATACCACTGCTTCCTATGTACTCTGCGTTGATA5226980.32121317302536706No Hit
AGATGTACTCTGCGTTGATACCACTGCTTAGATCGGAAGAGCGTCGTGTA5178060.31820689627963605Illumina Single End PCR Primer 1 (100% over 21bp)
CCATCCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCG4151020.2550922914363091No Hit
CCATCCTCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCG3982600.24474239099648876No Hit
CATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATACC3844160.23623484903657466No Hit
CATGTACTCTGCGTTGATACCACTGCTTAGATCGGAAGAGCGTCGTGTAG3534160.21718444447450172Illumina Single End PCR Primer 1 (100% over 22bp)
AGATGTACTCTGCGTTGATACCACTGCTTCTCATGTACTCTGCGTTGATA3109660.1910976808080503No Hit
ATCATTCCTATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGC3089750.1898741532118217No Hit
CCATGTACTCTGCGTTGATACCACTGCTTAGATCGGAAGAGCGTCGTGTA1929080.11854759494388252Illumina Single End PCR Primer 1 (100% over 21bp)
ATCATTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGC1874280.11517997504065156No Hit
CCATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATAC1743900.10716774359935137No Hit
AGATGTACTCTGCGTTGATACCACTGCTTTCCATGTACTCTGCGTTGATA1705490.10480733702119259No Hit
GTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACCAC1673070.1028150334215074No Hit
CATGTACTCTGCGTTGATACCACTGCTTCCTATGTACTCTGCGTTGATAC1651860.10151161703195397No Hit

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGATGTA18996400.0139.340671
GATGTAC18998550.0138.896642
AACGTGA3303850.0136.76451
ACGTGAT3313950.0136.226622
CGAACTT1555600.0132.63181
ATAGCGA1654700.0132.327561
TAGCGAC1657950.0131.047092
CAAGCTA1275400.0129.993062
ACGCTTA1441850.0129.69062
CTAACGA1735500.0129.154112
GGCTAAC1153500.0128.57832
GAACTTA1640700.0126.68372
AGAGTCA1169800.0126.45971
AGTTAGC808700.0126.362582
ACTAGTA1567600.0126.0815352
GAGTCAA1170550.0125.837992
ACTTCGA1148150.0125.6210562
GATAGAC1215550.0125.546261
GGCTTCA1958500.0125.402242
AGGCTAA1193800.0125.089821