SRR6503042_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR6503042_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	96146424
Sequences flagged as poor quality	0
Sequence length	150
%GC	43

Per base sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

Sequence	Count	Percentage	Possible Source
AAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAG	15589195	16.21401436625454	No Hit
AAGCAGTGGTATCAACGCAGAGTACATGGGGAAAAAAAAAAAAAAAAAAA	1040766	1.0824801970794047	No Hit
AAGCAGTGGTATCAACGCAGAGTACATGGGGGAAAAAAAAAAAAAAAAAA	508045	0.5284075879930802	No Hit
AAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATCAACGCAGA	506620	0.5269254735880764	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	342757	0.35649479797605366	No Hit
AAGCAGTGGTATCAACGCAGAGTACATGGGAAAAAAAAAAAAAAAAAAAA	324529	0.337536214555416	No Hit
AGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGA	295654	0.30750389634876074	No Hit
AAGCAGTGGTATCAACGCAGAGTACATGGGGCTAAACCTAGCCCCAAACC	225978	0.23503526246592385	No Hit
AAGCAGTGGTATCAACGCAGAGTACATGGGAGGCATTGAGGCAGCCAGCG	171812	0.17869827379123324	No Hit
CAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGT	166703	0.17338450361918817	No Hit
AAGCAGTGGTATCAACGCAGAGTACATGGGCACTATAGGCCCCTTATATT	165469	0.1721010445484691	No Hit
CAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGT	158071	0.16440653060586008	No Hit
AGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTA	153905	0.16007355614182803	No Hit
GAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAG	145555	0.15138888576864803	No Hit
AAGCAGTGGTATCAACGCAGAGTACATGGGTGCCCCTCATTTACATAAAT	137115	0.14261060816988888	No Hit
AAGCAGTGGTATCAACGCAGAGTACATGGGTAGAATCTTAGTTCAACTTT	135105	0.1405200467986204	No Hit
CGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCA	131402	0.13666862950617903	No Hit
AGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTG	131040	0.13629212044329386	No Hit
AAGCAGTGGTATCAACGCAGAGTACATGGGGGAATTCTGGACATTAATTA	129853	0.13505754514593285	No Hit
GCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAG	127697	0.13281513205316925	No Hit
GGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGC	124639	0.12963456654404537	No Hit
GGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACAT	124355	0.1293391837433288	No Hit
AACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAG	108749	0.11310769082789808	No Hit
CAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAA	105625	0.10985848002001615	No Hit
GTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTAC	105217	0.10943412726405716	No Hit
AAGCAGTGGTATCAACGCAGAGTACATGGGGATCCTAAAAAAAAACCAAC	101538	0.10560767189843692	No Hit
GAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCA	99748	0.10374592818969534	No Hit

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
AAGCAGT	13029775	70.708694	1
AGTGGTA	13504370	68.89794	5
GTATCAA	13501805	68.66398	9
AGCAGTG	13547925	68.62726	2
CAGTGGT	13709090	67.81297	4
GGTATCA	13649215	67.74571	8
GCAGTGG	13831645	67.23502	3
GTGGTAT	13912500	66.805984	6
TGGTATC	13846475	66.78194	7
GGTATAA	89315	46.68948	8
TGGTATA	93145	45.936764	7
GCAGTTG	89720	38.571938	3
TTGTATC	90615	37.95503	7
CAGTTGT	92335	37.509613	4
GTTGTAT	92690	37.19856	6
GTATAAA	114745	36.273045	9
TGTATCA	99805	34.4602	8
AGTTGTA	102055	34.039032	5
AGCAGTT	104250	33.278805	2
GAGCAGT	296115	29.9506	1

Summary

Basic Statistics

Per base sequence quality

Per sequence quality scores

Per base sequence content

Per sequence GC content

Per base N content

Sequence Length Distribution

Sequence Duplication Levels

Overrepresented sequences

Adapter Content

Kmer Content