SRR6502987_2.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR6502987_2.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	62328356
Sequences flagged as poor quality	0
Sequence length	150
%GC	54

Per base quality graph

$Per Sequence quality graph$

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATAC	1327006	2.1290566367577544	No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT	359070	0.5760941296125314	No Hit
CATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATACC	295281	0.4737506633417381	No Hit
ACCACTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACT	209293	0.33579098412286057	No Hit
CTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACCACTGCTT	98677	0.15831798932736169	No Hit
CCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATA	84179	0.13505730842636055	No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATA	75253	0.12073637880004409	No Hit
CATGTACTCTGCGTTGATACCACTGCTTAGATCGGAAGAGCGTCGTGTAG	72078	0.11564238915590844	Illumina Single End PCR Primer 1 (100% over 22bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GCCTAAG	1091460	144.4917	1
AAGTGAC	927705	142.82407	5
CTAAGTG	977645	142.82181	3
TAAGTGA	868910	142.67133	4
CCTAAGT	1077600	142.51723	2
CATCAAG	106570	142.04832	1
AGTGACT	506675	141.8196	6
GTGACTG	478180	141.30371	7
ATCAAGT	107905	140.74857	2
TGACTGG	455635	140.56458	8
AGTGACC	229395	140.1368	6
TAAGTCA	61125	139.38876	4
ACATTGG	104080	139.05544	1
CTAAGTC	77825	138.51976	3
CTCAATG	105835	138.43535	1
AGTGACA	108185	138.06712	6
CAATGGA	204860	138.01248	1
AGTGACG	132345	137.60579	6
AGAGTCA	51960	137.13583	1
TAAGTGC	78550	136.57674	4