FastQCFastQC Report
Mon 20 Mar 2023
SRR7403976_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR7403976_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences53526963
Sequences flagged as poor quality0
Sequence length150
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA3549310.6630882458248192No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA936140.1748912973074897No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AAGCAGT15720350.0139.256731
GGTATCA17000300.0137.482488
GTATCAA18597400.0137.478429
TGGTATC17011950.0137.467077
GTGGTAT17034950.0137.454766
AGCAGTG16702100.0136.949082
CAGTGGT17244750.0136.243844
AGTGGTA17709450.0132.575675
GCAGTGG17366850.0131.664573
TAGTATC897700.0124.80747
GTCGTAT221100.0124.4292146
TCGTATC233650.0118.146387
CAGCAGT2387750.0116.144971
CAGTAGT981100.0115.386824
GCAGTAG942750.0113.3980263
CGTATCA243000.0113.243798
GTAGTAT992450.0112.88476
AGTAGTA1005950.0112.500635
AGTATCA1010000.0110.993428
GCAGTCG253400.0103.425793