FastQCFastQC Report
Mon 20 Mar 2023
SRR6211794_2.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR6211794_2.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences107237829
Sequences flagged as poor quality0
Sequence length150
%GC37

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATAC23030512.1476106160261783No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT14778691.3781228264141752No Hit
AACAACCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGT1995790.18610876577891186No Hit
ACCACTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACT1296930.12093959865599292No Hit
CATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTCCGTTGATAC1253500.11688972181635644No Hit
CATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATACC1205320.11239690426780274No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCGTGAC4413550.0140.796525
ATGCCTA2434850.0140.526321
CAATGGA6732100.0140.057341
TGCCTAA2465100.0139.466722
ACGTGAT1923400.0139.215732
ATCGTGA4375400.0138.993044
GATCGTG4305700.0138.949723
AGAGTCA1494750.0138.893081
GAGTCAA1498800.0138.749162
AGTCACT1874900.0138.742691
CCGTGAG2447600.0138.335191
GTCACTA1895950.0138.037582
AGCTGAA2017050.0137.817282
CTCAATG2630050.0137.729191
CGTGACT1986550.0137.516486
AAGGTAC1963100.0137.442281
GAGCTGA2014000.0137.404331
CAAGCTA1234450.0137.333162
ACGCTTA1660700.0137.182
CGTGAGA2467250.0136.978522