FastQCFastQC Report
Mon 20 Mar 2023
SRR6211775_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR6211775_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences96402567
Sequences flagged as poor quality0
Sequence length150
%GC39

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA13431241.3932450574682311No Hit
AAGCAGTGGTATCAACGCAGAGTACATGGGGAAAAAAAAAAAAAAAAAAA2386780.24758469346568335No Hit
AAGCAGTGGTATCAACGCAGAGTACATGGGAGGCATTGAGGCAGCCAGCG1916060.19875611818511016No Hit
AAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAG1893650.19643149129006077No Hit
AAGCAGTGGTATCAACGCAGAGTACATGGGGGGAGTTGAGTGCTGAAAAA1171640.12153618274500927No Hit
AAGCAGTGGTATCAACGCAGAGTACATGGGGAGGCATTGAGGCAGCCAGC1124250.11662033854347469No Hit
AAGCAGTGGTATCAACGCAGAGTACATGGGAGGGAAGACTCTGGGCATTC1108570.11499382583868333No Hit
AAGCAGTGGTATCAACGCAGAGTACATGGGGGAAAAAAAAAAAAAAAAAA1050240.10894315708418842No Hit
AAGCAGTGGTATCAACGCAGAGTACATGGGGCTCCTTGCTATAGAAGACC1028490.10668699309635604No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AAGCAGT46897500.0139.613391
GTGGTAT46975450.0139.009936
GGTATCA46695350.0138.946038
TGGTATC46873200.0138.692437
GTATCAA46940250.0138.680259
AGCAGTG47060950.0138.632682
CAGTGGT47254800.0138.089374
AGTGGTA47319850.0137.972645
GCAGTGG47913850.0136.106163
GGTATAA477100.065.4044658
TGGTATA514550.060.9798667
GGTATCG143650.058.3142858
GTATCGA146450.057.395719
GCAGTTG636550.036.766233
TGTATCA636200.036.412878
TTGTATC641400.036.3084037
GTTGTAT699700.033.37576
GTATAAA1060900.029.6640919
CAACGCA46660900.028.16441710-14
TCAACGC46761150.028.09341810-14