Basic Statistics
Measure | Value |
---|---|
Filename | SRR6211775_1.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 96402567 |
Sequences flagged as poor quality | 0 |
Sequence length | 150 |
%GC | 39 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 1343124 | 1.3932450574682311 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGGAAAAAAAAAAAAAAAAAAA | 238678 | 0.24758469346568335 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGAGGCATTGAGGCAGCCAGCG | 191606 | 0.19875611818511016 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAG | 189365 | 0.19643149129006077 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGGGGAGTTGAGTGCTGAAAAA | 117164 | 0.12153618274500927 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGGAGGCATTGAGGCAGCCAGC | 112425 | 0.11662033854347469 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGAGGGAAGACTCTGGGCATTC | 110857 | 0.11499382583868333 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGGGAAAAAAAAAAAAAAAAAA | 105024 | 0.10894315708418842 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGGCTCCTTGCTATAGAAGACC | 102849 | 0.10668699309635604 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
AAGCAGT | 4689750 | 0.0 | 139.61339 | 1 |
GTGGTAT | 4697545 | 0.0 | 139.00993 | 6 |
GGTATCA | 4669535 | 0.0 | 138.94603 | 8 |
TGGTATC | 4687320 | 0.0 | 138.69243 | 7 |
GTATCAA | 4694025 | 0.0 | 138.68025 | 9 |
AGCAGTG | 4706095 | 0.0 | 138.63268 | 2 |
CAGTGGT | 4725480 | 0.0 | 138.08937 | 4 |
AGTGGTA | 4731985 | 0.0 | 137.97264 | 5 |
GCAGTGG | 4791385 | 0.0 | 136.10616 | 3 |
GGTATAA | 47710 | 0.0 | 65.404465 | 8 |
TGGTATA | 51455 | 0.0 | 60.979866 | 7 |
GGTATCG | 14365 | 0.0 | 58.314285 | 8 |
GTATCGA | 14645 | 0.0 | 57.39571 | 9 |
GCAGTTG | 63655 | 0.0 | 36.76623 | 3 |
TGTATCA | 63620 | 0.0 | 36.41287 | 8 |
TTGTATC | 64140 | 0.0 | 36.308403 | 7 |
GTTGTAT | 69970 | 0.0 | 33.3757 | 6 |
GTATAAA | 106090 | 0.0 | 29.664091 | 9 |
CAACGCA | 4666090 | 0.0 | 28.164417 | 10-14 |
TCAACGC | 4676115 | 0.0 | 28.093418 | 10-14 |