FastQCFastQC Report
Sun 19 Mar 2023
SRR6026875_2.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR6026875_2.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences144273908
Sequences flagged as poor quality0
Sequence length150
%GC50

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATAC6883110.477086265660732No Hit
CCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATA4849230.33611275020012626No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT3205380.2221732289943931No Hit
CCATGTACTCTGCGTTGATACCACTGCTTCCCACGTACTCTGCGTTGATA2090550.1449014606300122No Hit
CATGTACTCTGCGTTGATACCACTGCTTCCCACGTACTCTGCGTTGATAC1569240.10876810795199365No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTCGGTA13123500.0141.29892
ACGCTTA4559750.0139.476182
ATGCCTA3004100.0139.032031
TCGGTAA3939750.0137.868743
TCGGTAT4683550.0137.302383
GCTCGGT13613050.0136.933841
AACGTGA3144950.0136.419361
TGCCTAA3034050.0136.216692
ACGTGAT3152400.0136.102022
TCGGTAG4926250.0135.710483
ACGTATC1814050.0135.228591
CTGTAGC3956700.0134.873031
GATGTAC2585250.0134.357562
TACGCAA1739850.0133.041152
ATCCGTC2410100.0132.63292
GTACGCA1769500.0132.482651
AACGCTT4889050.0132.006911
GATAGAC1509350.0131.976931
GAGTCAA1924650.0131.111152
AGAGTCA1958700.0130.61821