FastQCFastQC Report
Sun 19 Mar 2023
SRR6026871_2.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR6026871_2.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences211217899
Sequences flagged as poor quality0
Sequence length150
%GC44

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCGTCTA6258150.0138.15332
GTCGTAG5377800.0136.440841
CAGATTC8252650.0135.339832
GAGCTGA8414200.0134.792271
GCGAGTA5726800.0134.787961
TCGTAGA4762850.0133.979112
ACTTCGA3359450.0133.427372
AGCTGAA7532700.0132.857032
CGAGTAA5089400.0132.426162
TATCAGC3985650.0132.030491
GGCTAAC4282450.0131.914112
TAGCGAC2659300.0131.864432
ACGTATC2326750.0131.555191
TCCGTCT7316650.0130.969181
CACTTCG3871250.0130.663971
ATAGCGA2789900.0130.662221
CGTCTAG2157050.0130.623933
CCTAATC4192650.0130.431151
ACAGATT9075650.0128.803041
GATAGAC3337700.0128.536741