FastQCFastQC Report
Sun 19 Mar 2023
SRR6026868_2.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR6026868_2.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences166735062
Sequences flagged as poor quality0
Sequence length150
%GC48

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATAGCGA4567300.0139.49751
CTCGGTA8981700.0139.355472
TAGCGAC4589100.0138.846122
CAGATTC9358600.0138.76232
GATCGCA5388250.0138.725452
GCCACAT9607750.0138.445541
ACGTATC3343400.0137.957211
AGATCGC5487450.0137.23291
GGAGAAC13093250.0136.859051
GAGAACA13069300.0136.090332
AGATTCG3247650.0135.635363
ACAGATT9634600.0134.9251
GAGTCAA3242850.0134.22342
AGAGTCA3268850.0134.18071
ACTAGTA3350500.0134.114092
AGCCATG4907050.0134.043671
ATCGCAT2022700.0133.88043
CCACATA9846500.0133.653872
CATACCA5419800.0133.40131
TCGGTAA2791050.0133.17383