FastQCFastQC Report
Sun 19 Mar 2023
SRR6026865_2.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR6026865_2.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences231553101
Sequences flagged as poor quality0
Sequence length150
%GC44

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATAC2941160.12701881284673447No Hit
CCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATA2479630.10708688371225915No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCTAATC7156150.0136.45871
TATCAGC6719450.0134.865891
CTAATCC7177950.0134.510152
CATACCA20031150.0134.44911
ATACCAA19592450.0134.35662
ACTTCGA3436550.0133.380942
TAATCCG2717000.0130.45063
ATCAGCA6751950.0130.387652
GGCTAAC4015950.0129.455492
TACCAAG7208800.0129.184073
TAGCGAC2418350.0129.093322
ACGTATC1983900.0128.463641
CACTTCG3679500.0127.993111
ATAGCGA2466350.0127.839741
CGCTCGA2638600.0127.1627662
TCTATCG1887450.0127.097163
CTCTATC5074500.0126.613862
ATGCCTA2084350.0125.908861
AGGCTAA4164700.0125.5834961
AGGTACA5785050.0124.990912