FastQCFastQC Report
Sun 19 Mar 2023
SRR6026849_2.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR6026849_2.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences219289944
Sequences flagged as poor quality0
Sequence length150
%GC45

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATAC4083760.18622650567141374No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT3287810.14992981164699465No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCACGGACTCTGCGTTGAT2356190.10744633141955658No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ACGCTTA8787700.0139.878362
ACGTGAT5309750.0134.724412
AACGTGA5232100.0133.854481
AGAGATC9853200.0132.899342
AACGCTT9313550.0132.420211
ATGCCTA2569800.0131.831091
ATGCGTC3137350.0131.6423
GCTGATC4818150.0131.636152
AATGCGT6574650.0131.238662
TAGCGAC2862750.0131.18622
TATCAGC3832850.0130.635281
CGCTTAA2742850.0130.601523
ATAGCGA2854800.0130.401261
CGCTTAT3230450.0129.855183
ATCATTC5135500.0129.592651
GAATGCG6805350.0129.55041
CGCTTAG3178400.0128.683873
AGCAGGA18218200.0128.610441
GCAGGAA18240700.0128.316852
CTGATCG1855000.0127.540453