Basic Statistics
Measure | Value |
---|---|
Filename | SRR6026849_2.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 219289944 |
Sequences flagged as poor quality | 0 |
Sequence length | 150 |
%GC | 45 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATAC | 408376 | 0.18622650567141374 | No Hit |
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT | 328781 | 0.14992981164699465 | No Hit |
CCCATGTACTCTGCGTTGATACCACTGCTTCCCACGGACTCTGCGTTGAT | 235619 | 0.10744633141955658 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
ACGCTTA | 878770 | 0.0 | 139.87836 | 2 |
ACGTGAT | 530975 | 0.0 | 134.72441 | 2 |
AACGTGA | 523210 | 0.0 | 133.85448 | 1 |
AGAGATC | 985320 | 0.0 | 132.89934 | 2 |
AACGCTT | 931355 | 0.0 | 132.42021 | 1 |
ATGCCTA | 256980 | 0.0 | 131.83109 | 1 |
ATGCGTC | 313735 | 0.0 | 131.642 | 3 |
GCTGATC | 481815 | 0.0 | 131.63615 | 2 |
AATGCGT | 657465 | 0.0 | 131.23866 | 2 |
TAGCGAC | 286275 | 0.0 | 131.1862 | 2 |
TATCAGC | 383285 | 0.0 | 130.63528 | 1 |
CGCTTAA | 274285 | 0.0 | 130.60152 | 3 |
ATAGCGA | 285480 | 0.0 | 130.40126 | 1 |
CGCTTAT | 323045 | 0.0 | 129.85518 | 3 |
ATCATTC | 513550 | 0.0 | 129.59265 | 1 |
GAATGCG | 680535 | 0.0 | 129.5504 | 1 |
CGCTTAG | 317840 | 0.0 | 128.68387 | 3 |
AGCAGGA | 1821820 | 0.0 | 128.61044 | 1 |
GCAGGAA | 1824070 | 0.0 | 128.31685 | 2 |
CTGATCG | 185500 | 0.0 | 127.54045 | 3 |