FastQCFastQC Report
Sun 19 Mar 2023
SRR6026841_2.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR6026841_2.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences184156353
Sequences flagged as poor quality0
Sequence length150
%GC49

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATAC2214660.12025976643879345No Hit
CCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATA2197960.11935292832390093No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTACGCA6229300.0140.49081
TACGCAA6192900.0139.573822
GATAGAC3206150.0136.335161
GCGAGTA3995400.0136.080781
CGAGTAA3988050.0135.122342
AGAGATC6345150.0134.669112
ACTTCGA2194900.0134.366622
ACCTTAC5689400.0134.055832
ATAGCGA2032850.0133.901641
AGGCTAA2910150.0133.825841
GGTGGTA14311950.0133.759082
TATCAGC2744200.0133.255051
CTCAATG3698050.0132.723661
TAGCGAC2052350.0132.610182
GGCTAAC2943150.0132.446012
ATCAGCA2730700.0132.05092
TCGTAGA2494800.0131.703372
CAGTTCA3948800.0131.624562
ATAGACA3296950.0131.591352
CACCTTA5825700.0131.45521