FastQCFastQC Report
Sun 19 Mar 2023
SRR6026838_2.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR6026838_2.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences149723669
Sequences flagged as poor quality0
Sequence length150-151
%GC45

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATAC1529430.10215018174581335No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AAGGACA52276850.0140.561971
AGGACAC50372200.0140.118592
GCCTAAG5751950.0138.630831
GGACACT18675950.0138.221163
AGTTAGC3545800.0137.084182
GACACGT5272850.0136.064824
GACACTT6096200.0135.750244
CCTAAGT4274150.0135.594162
GACACTA5429700.0135.136254
CTAAGTC2379100.0133.089393
GACACAT5440200.0133.02614
GGACACA15915300.0132.570983
GGACACG16613250.0131.840293
GAGTTAG4047600.0129.710971
GACACTG6586350.0128.920464
GTTAGCG1320900.0124.419323
CTAAGTG2451250.0124.185053
TATCAGC1255800.0123.1400151
CCTAAGG1841400.0122.861382
ACACTGT2562450.0122.607855