FastQCFastQC Report
Sat 31 Dec 2022
SRR5849741.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5849741.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences325966
Sequences flagged as poor quality0
Sequence length52
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACTATGCTCAATCTCGTATGCCGTCT25800.7914935913561537No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACTATGCTCAATCTCGTATGC24760.7595884233324948No Hit
ATCTGAAGACCTGTCTCTTATACACATCTCCGAGCCCACGAGACTATGCTCA4980.15277666995944364No Hit
CTTATACACATCTCCGAGCCCACGAGACTATGCTCAATCCTGTCTCTTATAC3340.10246467422982766No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACTATGCTCAATCCTGTCTCT3330.1021578937680617No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)