FastQCFastQC Report
Sat 31 Dec 2022
SRR5849716.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5849716.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences292146
Sequences flagged as poor quality0
Sequence length52
%GC43

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCTCTTATACACATCTCCGAGCCCACGAGACAACCCATGATCTCGTATGC6160.2108534773709036No Hit
CTTATACACATCTCCGAGCCCACGAGACAACCCATGATCTCGTATGCCGTCT5160.17662401675874392No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)