FastQCFastQC Report
Sat 31 Dec 2022
SRR5849655.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5849655.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences173412
Sequences flagged as poor quality0
Sequence length52
%GC43

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACAACCCATGATCTCGTATGCCGTCT10890.6279842225451526No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACAACCCATGATCTCGTATGC10260.5916545567780775No Hit
CACACAGGGATACCTGACTGGTACACTTCAAAACACTAAATATCAAAAAATT1940.11187230410813553No Hit
ATAATCGGGCAGAGGAGATGTGATTTTATTTTTCTGTACATAAAACTCATAA1780.10264572232602127No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)