FastQCFastQC Report
Sat 31 Dec 2022
SRR5849654.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5849654.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences172620
Sequences flagged as poor quality0
Sequence length52
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACAACCCATGATCTCGTATGCCGTCT10690.6192793419070791No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACAACCCATGATCTCGTATGC10490.6076931989340748No Hit
CACACAGGGATACCTGACTGGTACACTTCAAAACACTAAATATCAAAAAATT1930.11180627968949138No Hit
ATAATCGGGCAGAGGAGATGTGATTTTATTTTTCTGTACATAAAACTCATAA1750.1013787510137875No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)