FastQCFastQC Report
Sat 31 Dec 2022
SRR5849471.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5849471.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences169743
Sequences flagged as poor quality0
Sequence length52
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCTCTTATACACATCTCCGAGCCCACGAGACAATGACAGATCTCGTATGC9780.5761651437761792No Hit
CTTATACACATCTCCGAGCCCACGAGACAATGACAGATCTCGTATGCCGTCT9520.5608478700152584Illumina Paired End PCR Primer 2 (95% over 21bp)
CTTATACACATCTCCGAGCCCACGAGACAATGACAGATCCTGTCTCTTATAC2050.12077081234572265No Hit
GATTCAGGGGCTAGTGGAAACAGACAGTAAGTCGACAATGACAATACATGTG1710.10074053127374913No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)