FastQCFastQC Report
Sat 31 Dec 2022
SRR5849415.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5849415.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences62087
Sequences flagged as poor quality0
Sequence length52
%GC45

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACCGGAGTTAATCTCGTATGCCGTCT2460.39621820993122553No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACCGGAGTTAATCTCGTATGC2070.3334031278689581No Hit
CTCGACGGGATTGTATCTCAAAACTGTTTCCATGCTTTTCTAGTGTAATGAA670.1079130896967159No Hit
TCAATAGGGATATCTAGATTATGGAATTTTAAGAATTTTAATGGGACAGTTA670.1079130896967159No Hit
TCATATGGGGCAGGACAGGAAAAGGAGGGGAAATCTCGACATGGAAAAACTC660.10630244656691418No Hit
ATATCAGGGATCCATCCAAACCCCACACCATCTGGTAGATAAGTAGTCTGTG650.10469180343711244No Hit
GGTCTGGGTCCAGTGGCCACTCTCACTTTATATGAACTTTCTGTTATCTAAA650.10469180343711244No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)