FastQCFastQC Report
Sat 31 Dec 2022
SRR5849392.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5849392.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences81985
Sequences flagged as poor quality0
Sequence length52
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACCGGAGTTAATCTCGTATGCCGTCT3570.43544550832469353No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACCGGAGTTAATCTCGTATGC3190.3890955662621211No Hit
TCAACTGGGAGAAAACAAGCCCTCTCTCTTGTGAAGTATCTTCAAAGGATTG930.11343538452155881No Hit
AGCATAGGGACCGTGATCTTCGCCATCTTCTCCGCTATCATCTTCCTGTCAT890.10855644325181435No Hit
GATTTAGGGGAACAGACACTTTTCAAAAAAGACATACAGCCAACTAGCATGT850.10367750198206989No Hit
AAGTTGGGGATGTATCGTCTGTAAAGCAGCATGTGCAGATTATTCATAATAT820.10001829602976153No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)