FastQCFastQC Report
Sat 31 Dec 2022
SRR5849340.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5849340.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences144860
Sequences flagged as poor quality0
Sequence length52
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCTCTTATACACATCTCCGAGCCCACGAGACTTGGTACAATCTCGTATGC11200.7731602926963965No Hit
CTTATACACATCTCCGAGCCCACGAGACTTGGTACAATCTCGTATGCCGTCT10340.7137926273643518No Hit
GTTCCGGGTCTTCCTGGAATTGGATTTTATGTTAAACAACTTCTAAGGCCAG1910.1318514427723319No Hit
AGTACTGGGATTCACGATAGGATACAAAGTGTGATTTGTTGGAAACATGTCC1870.1290901560127019No Hit
TCTGAAGGTCCCTCCTGGATTTTTATCCTGACATTGTAAAGCATGGAGCCAA1750.12080629573381196No Hit
CGCTACGGGCCTTGTTCAAGTCTATGTTATGGATTTTGCTTCTTTCTAAAGT1750.12080629573381196No Hit
CTTATACACATCTCCGAGCCCACGAGACTTGGTACAATCCTGTCTCTTATAC1690.11666436559436698No Hit
GCACTAGGGAGAAGGAATATGCACTGCTGTCAAAAAGTTGCAATGTAAAATA1680.11597404390445948No Hit
GAACCGGGGTCCTCCAGGTTCATCCACGTTACAGCATGTGACAGAATTTTCT1630.112522435454922No Hit
AGCCTAGGGAGTATTTATAAAGCAAAAGAGCACTGTAGTATGAAAATTGTAT1630.112522435454922No Hit
ACAGCCGGTGGTCAGTGTGCAAAGAAAAGAACTGCTTGCATTTCTTTATTTC1610.111141792075107No Hit
CGTTAGGGGCAAGATAGGCTGGGAGAAAATCATTTTCAGGTGTGAAAAACTG1610.111141792075107No Hit
TCTGACGGGAGTGAGCCAAACTTTCAAGAAGACAGCTGAGAAAGCATACCTC1590.10976114869529201No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACTTGGTACAATCCTGTCTCT1590.10976114869529201No Hit
GGTTATGGGTTGGCGGTTGGCTTGTCGCGAATCTTCATCTTAGCACATTTCC1570.10838050531547701No Hit
AGTTATGGGGAAAAATGAAATTGGGTTCAGTTCGTGCATAGATTTCTAGAGA1560.10769018362556952No Hit
GCATTTGGGGATGTCAGTGGAAAAAAATGAAAACAAAATCATAATAAAAGTA1560.10769018362556952No Hit
TATCAAGGGGTGATTCAAATCTTACACCATTTGCCCACTTCTATGAATTTTA1550.10699986193566202No Hit
ATACGCGGGACCGAAGGACATTATCAAGAAAGCGGAAAGACATCTTACAGAA1540.10630954024575452No Hit
ATGCAGGGGTGATAAAATAGAGGATTTTAAATTTTGTATAGTATTTGTTAAT1540.10630954024575452No Hit
CAGCCAGGGAGAGGATGAACCTGCTATTTTCATCTCTTCTTGGTGGGAAGAA1540.10630954024575452No Hit
AGTTTGGGGATTCCTAAACCAAGCCAGCAAGGTGAATAGTTTAAATGTAATT1540.10630954024575452No Hit
TACCACGGGATATAAGGAACTTACAATTCAGTAGCAGAAAAACAACCTGATT1530.10561921855584704No Hit
GTATGAGGTCCGTGGGCGTAGGACCCTCTGAGCCAGGTGTGGGATATAGTCT1530.10561921855584704No Hit
TAACTGGGGTAGACATTCCGAGCTGTGACCTCTCACCTCCAGCAACAGCACC1520.10492889686593954No Hit
CCCCTACCAGCAGATTCTGCGAAAGCACCAAATTTCTCAAGACCCTCTTCTC1510.10423857517603202No Hit
TCAAATGGGGCTGGAGCCCATTCAGATAAAACTGCCCAATACTGAGAGGTGT1510.10423857517603202No Hit
GTGACTGGGGCAGATCCCAGAGTCAGCAGGCTTCTTCTCAGAGATGACAGAA1510.10423857517603202No Hit
CGACATGGGACTCTCCTAAAAACACAGAATTTGTTTTTTCTGTTCATTCATT1500.10354825348612452No Hit
CTTGATGTGGGGGAAGGAAAAAAGGAAGTGTTTGGACGACAGCGAGCGGGAG1490.10285793179621705No Hit
GTTCGAGGGGGACTGGGTCCTCAGGACAAGCAAGGAGTTGATGGACCAAACC1480.10216761010630954No Hit
ACTCCGGGTGGAGGCTGGAGTAATCAGATTACTGCTTTAATCAGAAACCCTC1480.10216761010630954No Hit
TAATATGGGATTTTGAGGAGGATTTACCATTTTCCCTAATCTCAGGCTATTG1480.10216761010630954No Hit
TATAGCGGGAGACATTTAATGAGTATTATTTAATTTAACATAACTTTAAGAT1470.10147728841640204No Hit
ACTTTAGGGAGTTATAATTTTATTTTTATTATACCGTTTAATATAATAGTTA1470.10147728841640204No Hit
CCTAAAGGGCAAGGAAGTAATGAATTCAGAAGAAAAGACTAAAAATGGTGTA1470.10147728841640204No Hit
TGTGGCGGGAGAGTCTAAAATTGGATCTGAATCCAGTATTTGCCAGCCAGTG1460.10078696672649455No Hit
TGGCTTGGGCTTGGTGCAGATACAGTATATTCTCATCAACTGGAAGGTTATT1460.10078696672649455No Hit
AATAGCGGGAAGATGATGCCACAGTGAAAAAAACTGTCATCCTTTAGTTGTA1450.10009664503658705No Hit
ACAGTCGGGTTCCTGTAACAGCATTTCTCCTGTATCTGAATTCTGCCTTACT1450.10009664503658705No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)