FastQCFastQC Report
Sat 31 Dec 2022
SRR5849278.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5849278.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences143736
Sequences flagged as poor quality0
Sequence length52
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACAGCCACTTATCTCGTATGCCGTCT11640.8098179996660545No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACAGCCACTTATCTCGTATGC9970.693632771191629No Hit
CTGCGAGGCCAATATCCCTGATGAACATAGATTCAAAAATCCTCAACAAAAT1610.11201090888851784No Hit
CTTATACACATCTCCGAGCCCACGAGACAGCCACTTATCCTGTCTCTTATAC1510.10505370957867202No Hit
ATCTATGGGAGAGAGGGATCTGGCTGATCTTCAACTCCACTAAGTTCTCCCC1490.10366226971670284No Hit
TACCGACGGGGAGTCTGTCTGAGGGCGGCCGAAGTGGCTGGCTCATTTAAGA1490.10366226971670284No Hit
CTTACTGGGAGGCCATCTGGAGAATGCAAGAGGGAAAGCATGGTAACTTCTT1450.10087938999276452No Hit
GCCGTAGGGCAACCTCAATGGTATTCCTACAGGAAATGGATAACCATTTTAA1440.10018367006177993No Hit
TGTATTGGGATGACAACCAATATTTGTTAGAGACCTCTTCTTTGTTGGACTA1440.10018367006177993No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)